Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0946
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926...    29   2.4  
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582...    28   7.2  

>01_05_0126 -
           18391879-18391937,18392021-18392102,18392508-18392667,
           18392739-18392807,18392850-18392992,18393069-18393203,
           18393283-18393341,18394090-18394187,18394347-18394510,
           18394586-18394647,18394803-18394977,18396331-18396588,
           18396694-18396841,18398458-18398813
          Length = 655

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 197 WSTMEFWFMHGG*NLISMYSRLKGIGTFSNSGTI 96
           W  M+ W ++   NLIS YSRL      +N G +
Sbjct: 605 WHAMQMWELNEKGNLISSYSRLCATVESNNKGVV 638


>04_03_0052 +
           10257109-10257337,10257580-10257668,10257708-10258289,
           10258477-10258668,10259392-10259563,10260190-10260461,
           10260682-10260801,10260912-10260968,10261631-10261831,
           10262451-10262511,10262712-10263013
          Length = 758

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 627 SKDCCHSLTHAITMHFSSALLQRSHRCEMSQTL 529
           ++DCCHSL       ++S+LL+  H+  ++  L
Sbjct: 139 TQDCCHSLRDTRNHRWTSSLLEVIHKIHINVPL 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,113
Number of Sequences: 37544
Number of extensions: 295527
Number of successful extensions: 490
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)