Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0946
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   24   4.0  
SB_22335| Best HMM Match : PAN (HMM E-Value=0.002)                     28   7.4  
SB_55016| Best HMM Match : PAN (HMM E-Value=0.011)                     28   7.4  
SB_54593| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-06)                 27   9.7  
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 23.8 bits (49), Expect(2) = 4.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 548 VRCRKHCGCTK 516
           V CR+HC CT+
Sbjct: 183 VDCRQHCNCTE 193



 Score = 23.4 bits (48), Expect(2) = 4.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 542 CRKHCGCTK*ARSDKI 495
           C  HC C K A  DKI
Sbjct: 228 CTAHCKCQKNATCDKI 243


>SB_22335| Best HMM Match : PAN (HMM E-Value=0.002)
          Length = 151

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 35  LVHNYHTKKSVDVTLSNTAEKLCRNWKMYQFPS 133
           +VH  H K +++  LS   E LC ++ M + PS
Sbjct: 81  VVHELHVKDAMECGLSCLQEDLCASYNMARKPS 113


>SB_55016| Best HMM Match : PAN (HMM E-Value=0.011)
          Length = 123

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 35  LVHNYHTKKSVDVTLSNTAEKLCRNWKMYQFPS 133
           +VH  H K +++  LS   E LC ++ M + PS
Sbjct: 58  VVHELHVKDAMECGLSCLQEDLCASYNMARKPS 90


>SB_54593| Best HMM Match : 7tm_1 (HMM E-Value=7.7e-06)
          Length = 244

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 321 FCYLYVFFVFNSFIIIC 371
           F YL +FF+F+S  +IC
Sbjct: 71  FFYLVIFFIFSSLTVIC 87


>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 487 FRMILSLRAYLVHPQCLRHLTTM 555
           F  I+ LRAYL  PQC+ +L+ +
Sbjct: 8   FGFIVELRAYLKRPQCIFNLSML 30


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 487 FRMILSLRAYLVHPQCLRHLTTM 555
           F  I+ LRAYL  PQC+ +L+ +
Sbjct: 107 FGFIVDLRAYLKRPQCIFNLSML 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,166,821
Number of Sequences: 59808
Number of extensions: 374106
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)