Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0946
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine r...    29   2.8  
U61957-4|AAM81129.1|  558|Caenorhabditis elegans Suppressor of c...    28   6.5  
AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF026209-10|AAB71273.2|  355|Caenorhabditis elegans Serpentine
           receptor, class i protein4 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 472 KVLNWFRMILSLRAYLVHPQCLRHLTTMTS 561
           +VLN +R I+S R Y +H   L  LTT  S
Sbjct: 229 QVLNRYRYIMSARTYQLHKSSLITLTTQVS 258


>U61957-4|AAM81129.1|  558|Caenorhabditis elegans Suppressor of clr
           protein 2, isoformb protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 585 HFSSALLQRSHRCEMSQTLRMH*ISAQ*QNHPKPVKYLFKDF*VFTLNEGVMCL 424
           H    LL+  H+C+ +Q  R+   S +  + P P+K L +   +F     + CL
Sbjct: 57  HAEKDLLKEFHKCKEAQDQRLDLSSIEITSIPSPIKELTQLTELFLYKNKLTCL 110


>AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical
           protein Y34B4A.8 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 2   EFGTRFCRKQLLVHNYHTKKSVDVTLSNTAEKLCRNWKMYQFPSIY 139
           E G RF R   + HN  TKK+ D  L      + RN K+  F S +
Sbjct: 2   EVGHRFRR---IKHNLQTKKTTDEELKLFENVMLRNTKVSNFASTF 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,131
Number of Sequences: 27780
Number of extensions: 291584
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)