Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0946
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16250.1 68416.m02050 ferredoxin-related contains Pfam profil...    31   0.65 
At5g14820.1 68418.m01738 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At3g62540.1 68416.m07026 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    27   7.9  

>At3g16250.1 68416.m02050 ferredoxin-related contains Pfam profile:
           PF00111 2Fe-2S iron-sulfur cluster binding domains
          Length = 204

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 87  PLKNCAGIGKCTNSLQSTVH*DEIL---PSMHKPKLHXRP 197
           PL NCAG+G C   +   V+  E+L     + K KL  +P
Sbjct: 116 PLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKP 155


>At5g14820.1 68418.m01738 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 598

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 236 KETARFIEDMVDKGYMTQFVNFEK 307
           +E  R++E+M+DKG  T  +++ K
Sbjct: 524 REACRYLEEMLDKGMKTPLIDYNK 547


>At3g62540.1 68416.m07026 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 599

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 236 KETARFIEDMVDKGYMTQFVNFEK 307
           +E  R++E+M+DKG  T  +++ K
Sbjct: 525 REACRYLEEMLDKGMKTPLIDYNK 548


>At3g62470.1 68416.m07018 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 599

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 236 KETARFIEDMVDKGYMTQFVNFEK 307
           +E  R++E+M+DKG  T  +++ K
Sbjct: 525 REACRYLEEMLDKGMKTPLIDYNK 548


>At4g38780.1 68417.m05491 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 203 NMIISTLSILHKETARFIEDMVDKGYMTQF 292
           N+ +  +S LH+  A+ + D+VD+ Y   F
Sbjct: 223 NLSLPIMSTLHRLAAQLLSDLVDRNYFYLF 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,219,067
Number of Sequences: 28952
Number of extensions: 256702
Number of successful extensions: 498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)