Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0945
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   5.5  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    25   9.5  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   9.5  

>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 348 PALIDLTSSATHARCWGVEIPIVELQSGTVP 256
           P +I+L  + T +  W V   ++EL  G  P
Sbjct: 173 PEVIELVGATTASDIWSVGCTVIELLDGNPP 203


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 540 WITRLLLEVRGSMIIK*LXMLLSPGFSLSGVSEHLGVG*LQLPEFVYXL 394
           W+  LLL   G  ++  L M LS      G+  +LG+G   +  F+Y L
Sbjct: 283 WVLSLLLFSAGGSVLIGLWMRLSDPSFAHGMLLNLGIG--SIGSFLYLL 329


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 283 CRIAKWYRSIGVSSGERTY 227
           C + +WYRS  +  GER Y
Sbjct: 214 CVVTRWYRSPELLLGERRY 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,418
Number of Sequences: 5004
Number of extensions: 44876
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)