Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0945
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0066 + 3801810-3802412,3802602-3802745,3803027-3803152,380...    29   3.2  
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877...    29   3.2  
02_02_0106 + 6814391-6817007,6817086-6817462                           28   5.6  
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029...    27   9.9  

>09_02_0066 +
           3801810-3802412,3802602-3802745,3803027-3803152,
           3803709-3803796,3804005-3804098,3804670-3804763,
           3805133-3805187,3805675-3805766,3805896-3806066,
           3806217-3806273,3806531-3806615,3806946-3807007,
           3807259-3807333,3807452-3807556,3807924-3808065,
           3808312-3808385
          Length = 688

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +1

Query: 7   DIKRTREGKRTSAHTVGASPAGVHSGD*K-EIQTSQQETQSGP----TRRRQPGVSYAAX 171
           ++KR++ G R    TV  SP+G  +G  K  I  S     +G     T     G S    
Sbjct: 64  ELKRSKSGVRVRPDTVNGSPSGAVNGSTKVAINGSPNAAVNGSMKAVTNGSVNGTSLVKG 123

Query: 172 SNLSEIIEQEE 204
           SN+S +++ ++
Sbjct: 124 SNMSALVKTQK 134


>04_03_0824 +
           20086639-20087263,20087282-20087463,20087569-20087724,
           20087867-20087989,20088079-20088247,20088384-20088466,
           20088641-20088742,20089246-20089359,20089735-20089811,
           20089884-20089962,20090060-20090128,20090235-20090410,
           20090460-20090561,20090678-20090768,20090878-20090976,
           20091141-20091326
          Length = 810

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 292 NSYCRIAKWYRSIGVSSGERTYFYRPII 209
           N  C++A + +S+GV  G+    Y P++
Sbjct: 317 NKVCQLANYLKSVGVGKGDAVVIYLPML 344


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 256 WNGTTLQFYNRNFNSPTPSVSGRTGKIYQGWN 351
           WN T L   N  F+ P P+++G+  K+++  N
Sbjct: 458 WNFTRLDISNNRFSGPIPTLAGKM-KVFRAAN 488


>04_04_0475 +
           25500470-25500609,25500697-25500794,25502806-25502915,
           25502998-25503293,25503399-25503474,25503577-25503688,
           25503955-25504004,25504090-25504392,25504446-25504547,
           25505463-25505635,25505745-25505917,25505997-25506106,
           25506180-25506329,25506726-25506881,25507000-25507116,
           25507277-25507474,25507809-25507952
          Length = 835

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 100 QTSQQETQSGPTRRRQPGVSYAAXS 174
           Q  QQ+TQ G  +R+QP  S AA S
Sbjct: 421 QQQQQQTQQGNRKRKQPTSSGAANS 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,137,690
Number of Sequences: 37544
Number of extensions: 318578
Number of successful extensions: 740
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)