Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0945
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_25318| Best HMM Match : fn3 (HMM E-Value=2e-15)                     29   4.4  
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)         28   7.6  

>SB_50063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +1

Query: 265 TTLQFYNRNFNSPTPSVSGRTGKIYQGWNPXTDTWXIKQSTASQXIHKLRKLELSY---- 432
           T+  F +RN   P   +  + G  YQG NP        + T      +L+++ELS+    
Sbjct: 138 TSGHFDDRNVRPPNHVIQTKRG--YQGGNPCQSVLVNYKDTRDYETSELKRIELSHDVYP 195

Query: 433 -AEVLRNAAKTK 465
             E  +N ++TK
Sbjct: 196 NLEQFKNQSRTK 207


>SB_25318| Best HMM Match : fn3 (HMM E-Value=2e-15)
          Length = 911

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
 Frame = +2

Query: 185 KSSNKKKRDYRPIEVSPLARADTDGTVPLCNSTIG--ISTPQHRA*VAELVRSIK----- 343
           +  NKK   Y P+E   + + D +G     ++  G  +    ++     + RS+K     
Sbjct: 193 RGKNKKSASYEPVETVAMVKLDENGASADNSNNKGRHLQGLTNKDCALRVKRSLKLDLTQ 252

Query: 344 -AGTPXQTRGX*SRAPPRRXYTNSGS 418
               P QT    ++ PPR  Y ++GS
Sbjct: 253 AMNRPSQTELKFTKTPPRILYVSNGS 278


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +1

Query: 46  HTVGASPAGVHSGD*KEIQTSQQETQSGPTRRRQP 150
           H V  S  GVH+G  K      +ETQS   RRRQP
Sbjct: 486 HRVFGSSPGVHTGWTKY---KDKETQSQDVRRRQP 517


>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
          Length = 229

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 280 YNRNFNSPTPSVSGRTGKIYQGWNPXTDTWXIKQSTASQXIHKLRKLELSY 432
           +  NF  P    +  T K++  W P T  W +K+S      H   K +L Y
Sbjct: 79  FKSNFTEPFTMAADPT-KMF--WTPDTYFWNVKRSKYHHVTHAYTKNDLDY 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,497,677
Number of Sequences: 59808
Number of extensions: 358632
Number of successful extensions: 769
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)