Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0945
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppress...    29   2.9  
U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.        29   2.9  
S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.        29   2.9  
Z69716-4|CAA93528.1|  480|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppressor
           of activatedras protein 1 protein.
          Length = 771

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 256 WNGTTLQFYNRNFNSPTPSVS-GRTGKIYQGWN 351
           WN  T+QF    F+   P +  GR GK+ +G++
Sbjct: 464 WNEVTIQFETIEFDKQAPIIGRGRFGKVLRGFH 496


>U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 256 WNGTTLQFYNRNFNSPTPSVS-GRTGKIYQGWN 351
           WN  T+QF    F+   P +  GR GK+ +G++
Sbjct: 464 WNEVTIQFETIEFDKQAPIIGRGRFGKVLRGFH 496


>S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 256 WNGTTLQFYNRNFNSPTPSVS-GRTGKIYQGWN 351
           WN  T+QF    F+   P +  GR GK+ +G++
Sbjct: 464 WNEVTIQFETIEFDKQAPIIGRGRFGKVLRGFH 496


>Z69716-4|CAA93528.1|  480|Caenorhabditis elegans Hypothetical
           protein C04B4.4 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 21  KRRKKNECSHRWCVTGWST*RRLERNPDI 107
           KRRK  EC   W   GW+   +L+R PD+
Sbjct: 176 KRRKFIECRTHWFQIGWNDVVKLQR-PDV 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,387,172
Number of Sequences: 27780
Number of extensions: 260697
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)