Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0945
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ...    30   1.5  
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ...    30   1.5  
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ...    30   1.5  
At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1) id...    29   2.0  
At4g32630.1 68417.m04645 hypothetical protein                          29   2.7  
At1g13960.2 68414.m01642 WRKY family transcription factor simila...    27   8.2  
At1g13960.1 68414.m01641 WRKY family transcription factor simila...    27   8.2  

>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 295 NSPTPSVSGRTGKIYQGWNPXTDTWXIKQSTASQXIHKLRKLELSYAEVLRN 450
           +SP     G  G++Y+G +  +D+   +Q   SQ  H+L  L  +Y   + N
Sbjct: 367 SSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDN 418


>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 295 NSPTPSVSGRTGKIYQGWNPXTDTWXIKQSTASQXIHKLRKLELSYAEVLRN 450
           +SP     G  G++Y+G +  +D+   +Q   SQ  H+L  L  +Y   + N
Sbjct: 367 SSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDN 418


>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 448

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 295 NSPTPSVSGRTGKIYQGWNPXTDTWXIKQSTASQXIHKLRKLELSYAEVLRN 450
           +SP     G  G++Y+G +  +D+   +Q   SQ  H+L  L  +Y   + N
Sbjct: 367 SSPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDN 418


>At4g39400.1 68417.m05577 brassinosteroid insensitive 1 (BRI1)
           identical to GI:2392895
          Length = 1196

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/78 (26%), Positives = 31/78 (39%)
 Frame = +2

Query: 209 DYRPIEVSPLARADTDGTVPLCNSTIGISTPQHRA*VAELVRSIKAGTPXQTRGX*SRAP 388
           D R + +  L+    DG +P   S + + T        +L  +  +G P    G     P
Sbjct: 700 DLRGLNILDLSSNKLDGRIPQAMSALTMLTE------IDLSNNNLSG-PIPEMGQFETFP 752

Query: 389 PRRXYTNSGSWSYPTPRC 442
           P +   N G   YP PRC
Sbjct: 753 PAKFLNNPGLCGYPLPRC 770


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 22  REGKRTSAHTVGASPAGVHSGD*KEIQTSQQETQSG 129
           RE K+TSAH +G+    +HS D  +I+ S    +SG
Sbjct: 125 RESKKTSAHVLGS--RSLHSVDKSDIERSSAAGRSG 158


>At1g13960.2 68414.m01642 WRKY family transcription factor similar
           to WKRY DNA-binding protein GB:AAD17441
          Length = 487

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 649 STNRGYNSIGINSYSTRSQNKTK 581
           + NRG + +G + + T S NKTK
Sbjct: 280 NNNRGSSELGASQFQTNSSNKTK 302


>At1g13960.1 68414.m01641 WRKY family transcription factor similar
           to WKRY DNA-binding protein GB:AAD17441
          Length = 514

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 649 STNRGYNSIGINSYSTRSQNKTK 581
           + NRG + +G + + T S NKTK
Sbjct: 307 NNNRGSSELGASQFQTNSSNKTK 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,737,519
Number of Sequences: 28952
Number of extensions: 245408
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)