Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0944
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 29 0.57
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 29 0.76
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.0
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 26 5.3
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 25 7.1
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 7.1
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 9.3
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 9.3
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.3
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 25 9.3
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 29.1 bits (62), Expect = 0.57
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 241 VSGLPPYGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQD 420
VS + Y +SI++ P T+T +N+E ++ + + + V+P + D Y T T+
Sbjct: 811 VSSISTYSSSIELTPQITKTSLNREK-PALHGSINLKHSTRPVVP-IADGIYAST-TLHP 867
Query: 421 ADTAKWQMV 447
D AK ++V
Sbjct: 868 IDNAKNRLV 876
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 28.7 bits (61), Expect = 0.76
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 343 DQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKT 504
+++ I S+L + + Y + + +AD A+ QP GD L +W ++ T
Sbjct: 857 EEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDT 910
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 497 LYLTHIVYLFSLSPTGCT 444
+Y H+VY+ SLSP C+
Sbjct: 1399 VYAAHLVYILSLSPDVCS 1416
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -2
Query: 487 PTSCICLAYRRPAVPSAIWPCRHPALFLC-RYI*NRSYP 374
P CICL P + PC H + C R N S+P
Sbjct: 190 PECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHP 228
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 313 ETCLQVNSTQDQLQDIQSVLPDMTDFKYIG-TETMQDADTAK 435
ET LQ N+T L +++ V PD +K IG T Q + AK
Sbjct: 26 ETQLQENTTV--LNELEKVAPDSNIYKQIGPTLVKQSHEEAK 65
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = -2
Query: 205 IDSRFAVLTVVPSIEWLMQFSIGYI*ESLYCVY----WTPLWWRPFID 74
I S VLT+ P I W +Q +I Y VY W+ + W D
Sbjct: 164 IGSALFVLTIFPLIYWYIQHKFKHI-PGAYTVYAFFEWSLILWDILFD 210
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 235 VHVSGLPPYGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLP 375
+HV+G PP S + P + + MN E L ++ +QL + P
Sbjct: 204 IHVTGTPPGAVSQRSEPDSRLSSMN-EMQLLASAAANQLDAAPRITP 249
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 572 GAQERIETFHLISDRYGHRIP 510
GA I TFH++ D RIP
Sbjct: 65 GATSAISTFHILKDEIIRRIP 85
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 360 DVLELILRRIDLQARLLVHLSFRCDRRDLYRSTV 259
D L ++L + A LL H C R +Y STV
Sbjct: 91 DTLSILLEILSFSAHLLSH----CANRSIYNSTV 120
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 340 QDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNK 474
QD+L+D+ + P + K GT+ D ++W V D L +
Sbjct: 479 QDKLRDLAAKHPYFEEVKRYGTDANGDPLWSEWFYNPDVDDDLER 523
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 95 QWSPVYTVKGLL 130
QWSPVYT+K L
Sbjct: 96 QWSPVYTMKSAL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,782
Number of Sequences: 5004
Number of extensions: 55429
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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