Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0944
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450...    29   3.2  
10_07_0152 + 13439178-13439517,13440072-13440229,13440431-134404...    28   5.5  
11_06_0636 - 25711965-25712232,25712438-25712502,25713033-257132...    28   7.3  
12_02_0628 + 21357876-21359921                                         27   9.7  
01_01_0278 - 2281536-2281977,2282523-2282926                           27   9.7  

>06_03_0849 -
           25344261-25344416,25344652-25344808,25344917-25345056,
           25345160-25345295,25345392-25345663,25345809-25346068,
           25346716-25347035,25347287-25347352,25347439-25347510,
           25347609-25347680,25347776-25347858,25348068-25348139,
           25348389-25348485,25348918-25349050,25349158-25349236
          Length = 704

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 199 NRLLWRYGQ-DLPVHVSGLPPYGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQ 363
           NR +W + Q D PV  S LPP G        +T + M+K+  + V +    +  +Q
Sbjct: 334 NREIWDHTQQDAPVSSSVLPPMGKMTPERVYSTNSSMSKKMKVSVTANPYTVASLQ 389


>10_07_0152 +
           13439178-13439517,13440072-13440229,13440431-13440477,
           13441115-13441178,13441600-13442237,13442328-13442562
          Length = 493

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 77  DKGSPPQWSPVYTVKGLLNIPYAELHEP 160
           D GS  +W P+    G +N P   LH P
Sbjct: 391 DSGSTSEWRPLIKKYGYVNCPTVRLHIP 418


>11_06_0636 -
           25711965-25712232,25712438-25712502,25713033-25713296,
           25713405-25713854
          Length = 348

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/69 (23%), Positives = 36/69 (52%)
 Frame = +1

Query: 268 SIKIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMV 447
           ++KIA V  +   N+  CL+++   D+ + +  +L   +++ Y    T + A  A W M+
Sbjct: 17  AMKIATVAKKARQNQTKCLELS---DRARRVAGIL---SNYNYKPAATGEAAAAATWDML 70

Query: 448 QPVGDKLNK 474
             + + L++
Sbjct: 71  GSLNEALDE 79


>12_02_0628 + 21357876-21359921
          Length = 681

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +1

Query: 370 LPDMTDFKYIGTETMQDADTAKWQMVQPVGDKL---NKYTMWVKYKKTLKGILCPYRSDM 540
           L   T  KY+      +A+ A+WQM Q V D      ++  W++  +   G+  P R D+
Sbjct: 362 LEGYTTCKYLNVVWDNEANAARWQMTQ-VSDSFPSEEEFKKWLQVAEK-NGVRVPTRQDV 419


>01_01_0278 - 2281536-2281977,2282523-2282926
          Length = 281

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 328 VNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKY 477
           +N  +D   D+Q +   M  F   G      A T +W     VGD  N Y
Sbjct: 54  MNHFRDLELDVQQIENGMVPFPVYGAAAAGGAFTLQWDGAHGVGDFRNAY 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,725,321
Number of Sequences: 37544
Number of extensions: 376277
Number of successful extensions: 954
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)