Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0944
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 7e-11
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40) 50 2e-06
SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_33545| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_1137| Best HMM Match : CC (HMM E-Value=2) 30 1.4
SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 5.7
SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13) 28 5.7
SB_41146| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0) 28 5.7
SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19) 28 7.5
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5) 27 9.9
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11) 27 9.9
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 73.3 bits (172), Expect = 2e-13
Identities = 28/50 (56%), Positives = 36/50 (72%)
Frame = +2
Query: 86 SPPQWSPVYTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 235
+PP W YT+ G+L +PYAE+ EPF AW+D +SRIDYYGGM T+Q
Sbjct: 337 TPPTWPQEYTLTGVLRLPYAEIEEPFQAWFDGGRKRSRIDYYGGMDSTFQ 386
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/96 (34%), Positives = 50/96 (52%)
Frame = +1
Query: 199 NRLLWRYGQDLPVHVSGLPPYGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPD 378
+R+ + G D + G + +I P++TET++N +C Q N T QSVLPD
Sbjct: 373 SRIDYYGGMDSTFQRGDILTAGANFRICPMSTETKLNVRSCFQTNGTSASPVGPQSVLPD 432
Query: 379 MTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMW 486
+ F ++G T D + W+ VG K NKYTM+
Sbjct: 433 LAKFSFVGNSTYGDVKCSIWEYKLTVGHKRNKYTMY 468
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 522 PIPVRYEMKGFNSLLGS 572
P P+ YEM GF+ L+GS
Sbjct: 475 PAPIHYEMLGFDDLIGS 491
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 64.5 bits (150), Expect = 7e-11
Identities = 31/101 (30%), Positives = 52/101 (51%)
Frame = +1
Query: 187 QQIENRLLWRYGQDLPVHVSGLPPYGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQS 366
Q +R+ + YG D + + P+G + KI P+ T+ + C + T+ +Q
Sbjct: 76 QHNRSRIDYYYGTDRTFQRADVGPHGEAFKIVPIYTDEKGGYIGCWHLEGTERTPIVVQP 135
Query: 367 VLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWV 489
++P+MTDFK+ G E A TAKW+ +N +T+WV
Sbjct: 136 IVPNMTDFKFAGYEVYHGASTAKWEYRYLAFGLMNAHTIWV 176
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Frame = +2
Query: 80 KGSPPQWSPV-----YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 235
+ +PP P Y G L +P++++ EPF W+ +++++SRIDYY G +T+Q
Sbjct: 37 RSAPPPMKPFHFPRNYHATGKLQLPHSKIEEPFEVWFSAQHNRSRIDYYYGTDRTFQ 93
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 522 PIPVRYEMKGFNSLLGS 572
P PVRYEMKG+++LL S
Sbjct: 182 PRPVRYEMKGYDNLLAS 198
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 57.6 bits (133), Expect = 8e-09
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +2
Query: 110 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 235
Y G+L++PY ++ EPF WY + SRIDYYGGM +TYQ
Sbjct: 39 YHATGVLSLPYGDIKEPFEVWYSGLHGMSRIDYYGGMDRTYQ 80
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +2
Query: 110 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 235
Y G+L +P +E++EPF W+ +++SRIDYYGG VKTYQ
Sbjct: 902 YHATGVLRLPTSEVNEPFEIWFSRPHNQSRIDYYGGDVKTYQ 943
>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
Length = 1198
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +2
Query: 110 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 235
Y G L++PY + EPF +WY + SRIDYY GM KT+Q
Sbjct: 1020 YHAIGTLHLPYDNIREPFESWYARDYNMSRIDYYYGMDKTFQ 1061
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +2
Query: 110 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMV 223
Y V+G L++PY E+ EPF AWY + SRIDYY G V
Sbjct: 878 YRVQGTLSLPYDEIVEPFEAWYAGDYNMSRIDYYYGKV 915
Score = 45.2 bits (102), Expect = 5e-05
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Frame = +1
Query: 199 NRLLWRYGQDLPVHVSGLPPYGTSIKIAPVT--TETEMNKET--CLQVNSTQDQLQDIQS 366
+R+ + YG D L YG +K+ P + +++K T C + Q QS
Sbjct: 1048 SRIDYYYGMDKTFQRGDLMDYGVLVKVVPAHWGRDEDLDKNTISCWYRPGFRWSQQRGQS 1107
Query: 367 VLP-DMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKK 501
VLP + FK+IG E T K+Q + K N YT W+ K
Sbjct: 1108 VLPAHLEHFKFIGEEIRSGMPTFKYQRNTTIFHKKNSYTFWMTKAK 1153
>SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +2
Query: 110 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGG 217
Y V+G L++PY E+ EPF AWY + SRIDYY G
Sbjct: 72 YRVQGTLSLPYDEIVEPFEAWYAGDYNMSRIDYYYG 107
>SB_33545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 180 VRTANRESITMEVWSRLTSSRQRSTALRYFYKDRAGHNGN*DEQGDVPAS-QFDARSAPR 356
+R +E E++S+LT++ Q STA+ ++A H G ++ P + + + R R
Sbjct: 2 LRAHYQEKSATELYSQLTTAVQASTAINALKGEKASHCGRAEKGSGFPLNYRQNIRDFSR 61
Query: 357 HPISATGY 380
H S T Y
Sbjct: 62 HAKSLTTY 69
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 274 KIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTA 432
K++PV T+ E ++ + Q +++DI ++ D+ D KY ADT+
Sbjct: 4087 KLSPVGTDVETIEQQMDDLKELQKEVEDIDELIADLNDQKYRVALQNPTADTS 4139
>SB_1137| Best HMM Match : CC (HMM E-Value=2)
Length = 410
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +1
Query: 226 DLPVHVSGLPPYGTSIKIAP---VTTETEMNKETCLQVNSTQDQLQDIQSVLP-DMTDFK 393
D + L G KI P V T ++ N +C + QSV+P ++T+FK
Sbjct: 184 DKTIQRGDLGANGMLFKIVPMHYVVTPSDKNIISCWYKPLATWLPRAGQSVVPTNLTEFK 243
Query: 394 YIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKK 501
+ ET + + ++Q +K N Y +W+ K
Sbjct: 244 MVAIETHRGHPSFRFQRKFSELNKTNTYILWITTHK 279
>SB_38544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -1
Query: 527 YGHRIPFKVFLYLTHIVYLFSLSPTGCTICHLAVSASCIVSVPIYLKSVIS--GSTDWMS 354
+ + IP+ + HI+ ++SP G T C ++ S+ + + I L+ +S G T
Sbjct: 25 WSYNIPWSHNMPCLHIILQHAVSPHGLTTCRVSTSSYNMSCLHIILQHAVSPHGLTT-CR 83
Query: 353 WS*SCVELTCRHVSLFISVS 294
S S + C H+ L +VS
Sbjct: 84 VSTSSYNMPCLHMVLQHAVS 103
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 77 DKGSPPQWSPVYTVKGLLNI 136
DKGSPPQ+S + + +LNI
Sbjct: 451 DKGSPPQYSEITVIVKVLNI 470
>SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13)
Length = 317
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 325 QVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQM--VQPVGDKLNKYTMWV 489
Q T + QD +S ++D KYIG + + T +W + +P +L+ + WV
Sbjct: 153 QEGYTGELCQDCKSPPIGISDEKYIGNSRIAGSSTGQWVLDYFEPYKGRLHGPSSWV 209
>SB_41146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +1
Query: 217 YGQDLPVHVSGLPPYGTSI----KIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMT 384
Y ++P HVSGLP + + +T ++E + ++V + Q L++I+ LP +
Sbjct: 296 YSANVPGHVSGLPMSVSHLPHDDDQCVMTEKSESIEANIIRVTTLQLDLEEIKKDLPKIL 355
Query: 385 DFKYIG--TETMQDADTAKWQ 441
G TE D +T + Q
Sbjct: 356 VKSVFGWVTEVCPDEETERDQ 376
>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1250
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 244 SGLPPYGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMTD 387
SG P ++ ++ ++ T + T + S LQD +S+LPD++D
Sbjct: 680 SGSPSPNATLDLSDLSRRTSLYSTTTVSFGS---DLQDTESLLPDLSD 724
>SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19)
Length = 1053
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -3
Query: 591 DSNDRSGSPGAN*NLSSHIGPVWAQNPL--QSLLVFNPHRVFV*LIAD 454
D++ R+G G + N H+GP + NPL LL F HRV L+AD
Sbjct: 287 DASARTGKKGVSFNDCLHVGP--SLNPLLFNVLLKFRLHRVA--LVAD 330
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 232 PVHVSGLPPYGTSIKIAPVTTET 300
PVH+S +P Y SI + P+TT +
Sbjct: 93 PVHLSTIPYYIQSISVPPLTTSS 115
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 244 SGLPPYGTSIKIAPVTTET--EMNKETCLQVNSTQDQLQDIQSVLPDM 381
SG+P G SIK +P+ T+ + + Q +L+D Q + DM
Sbjct: 39 SGIPSPGNSIKKSPIPTQRIGSIASSVTKDYDELQQKLKDQQKYIADM 86
>SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5)
Length = 674
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -3
Query: 546 SSHIGPVWAQNPLQSLLVFNPHRVFV*LIA---DRLYHLPFGRVGILHCFCADIFKIG-H 379
+ H G V A P + LLVFNP + L A + +P+ RV + IFK H
Sbjct: 583 TKHNGDVMANIPAKQLLVFNPKDGWEPLCAFLGAEVPAIPYPRVNVNSTAIPSIFKNSWH 642
Query: 378 IR 373
+R
Sbjct: 643 VR 644
>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
Length = 1033
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 389 LNISAQKQCRMPTRPNGRWYSRSAIS 466
L+ S++ CR PTRP R++S +A+S
Sbjct: 34 LDESSRDVCRFPTRPLIRYFSFTALS 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,500,476
Number of Sequences: 59808
Number of extensions: 433694
Number of successful extensions: 1324
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -