Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0944
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.83 
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   5.8  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   7.7  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 636 KTSGSIS-SIXXLHNPDSNDRSGSPGAN*NLSSHIGPVWAQN 514
           KT GS   S+   +N  +   SGS G+N N+S  I  V  QN
Sbjct: 212 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 253


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 86 TLYRHIQMRRPRKNTTTQRIT*FDRR 9
          TL +H   R+PR   TTQ++   +++
Sbjct: 2  TLRKHKPNRKPRTPFTTQQLLSLEKK 27


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 66  LDMSIKGRHHNGVQY 110
           LD SIK + HNG  Y
Sbjct: 25  LDCSIKPKDHNGSIY 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,809
Number of Sequences: 438
Number of extensions: 4155
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)