Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0944
(644 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui... 35 0.040
At5g61390.1 68418.m07702 exonuclease family protein contains exo... 33 0.21
At5g07710.1 68418.m00884 exonuclease family protein contains exo... 31 0.50
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At5g44530.1 68418.m05455 subtilase family protein contains Pfam ... 28 6.1
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 28 6.1
At2g33280.1 68415.m04079 integral membrane transporter family pr... 28 6.1
At2g26380.1 68415.m03166 disease resistance protein-related / LR... 28 6.1
At5g13510.1 68418.m01560 ribosomal protein L10 family protein ri... 27 8.1
At3g50920.1 68416.m05575 phosphatidic acid phosphatase-related /... 27 8.1
At1g33590.1 68414.m04158 disease resistance protein-related / LR... 27 8.1
>At3g53090.1 68416.m05851 HECT-domain-containing protein /
ubiquitin-transferase family protein / IQ
calmodulin-binding motif-containing protein contains
Pfam profiles PF00632: HECT-domain
(ubiquitin-transferase), PF00612: IQ calmodulin-binding
motif
Length = 1142
Score = 35.1 bits (77), Expect = 0.040
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 292 TETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGD-KL 468
TE ++E V L I VL D +K I E +DA+TAK ++Q +G K
Sbjct: 165 TECNYSQERIKDVIGVNALLLRILIVLTDPKSWKIITNENFEDAETAKKIIIQFIGSCKS 224
Query: 469 NKYTMWVKYKKTL 507
Y+ +Y KTL
Sbjct: 225 GYYSAVRRYIKTL 237
>At5g61390.1 68418.m07702 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 487
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 74 VDKGSPPQWSP-VYTVKGLLNIPYAELHEP 160
VD GS W+P V +KG LN P A +H P
Sbjct: 383 VDSGSGSDWNPLVIPMKGFLNCPTARIHIP 412
>At5g07710.1 68418.m00884 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 468
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 74 VDKGSPPQWSPVYT-VKGLLNIPYAELH 154
VD GS +W+PV +KG +N P A +H
Sbjct: 365 VDSGSTSEWNPVVNPMKGFVNYPNARIH 392
>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9NVW2 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Homo sapiens}; contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 131 LGVPLLCILDSIVVATLYRHIQMRRPRKNTTT 36
LG L C+L + V YR RR + TTT
Sbjct: 136 LGYALQCVLHMVCVCVEYRRRNRRRTNRTTTT 167
>At5g44530.1 68418.m05455 subtilase family protein contains Pfam
profiles: PF00082 subtilase family
Length = 840
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 238 HVSGLPPYGTSIKIAPVTTETEMNKETCLQVNST 339
+V PPYG S+K++P M + L V T
Sbjct: 771 NVGWSPPYGVSMKVSPTQFSIAMGENQVLSVTLT 804
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 482 IVYLFSLSPTGCTICHLAVSASCIVSVPIYLKSVISGSTDWMSWS*SCVEL 330
+ YL S T + + S +VS+ +Y+ VIS W+S C+ L
Sbjct: 1 MAYLSSSQSTFISCSENSSLDSILVSINVYILGVISDPEAWISLKQKCITL 51
>At2g33280.1 68415.m04079 integral membrane transporter family
protein contains 9 transmembrane domains; contains Pfam
PF03092: BT1 family; contains TIGRFAMS TIGR00788:
folate/biopterin transporter
Length = 408
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -1
Query: 542 LISDRYGHRIPFKVFLYLTHIVYLFSL 462
++ DRY ++P + +++ ++Y FSL
Sbjct: 227 VVYDRYWKKLPMRALIHIVQLLYAFSL 253
>At2g26380.1 68415.m03166 disease resistance protein-related / LRR
protein-related contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-2A
[Lycopersicon pimpinellifolium] gi|3894389|gb|AAC78594
Length = 480
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Frame = -1
Query: 509 FKVFLYLTHIVYLFSLSPTGCTICH------LAVSASCIVSVPIYLKSVISGSTDWMSWS 348
F F T +++L L+PT CH L S I P + S TD SW+
Sbjct: 6 FHNFFIFTAVIFLRCLNPTAAATCHPDDEAGLLAFKSGITKDPSGILSTWKKGTDCCSWN 65
Query: 347 *SCVELTCRHVSLFISVSVVTGAIFI 270
R V L I + IF+
Sbjct: 66 GVSCPNGNRVVVLTIRIESDDAGIFL 91
>At5g13510.1 68418.m01560 ribosomal protein L10 family protein
ribosomal protein L10- Nicotiana tabacum, EMBL:AB010879
Length = 220
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 337 TQDQLQDIQSVLPDMTDFKYI-GTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKTLKG 513
T Q QD++ LPD T T + + KW+ ++P +N + ++V+ + +
Sbjct: 74 TVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEALKPCMKGMNAW-LFVQTDE-IPS 131
Query: 514 ILCPYRS 534
+ PYRS
Sbjct: 132 AIKPYRS 138
>At3g50920.1 68416.m05575 phosphatidic acid phosphatase-related /
PAP2-related contains Pfam profile PF01569: PAP2
superfamily
Length = 279
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 211 IVIDSRFAVLTVVPSIEWLMQFSIGYI*ESLYCVYWTPLW 92
+ + S F L V + Q +G I SL+C+ W +W
Sbjct: 198 LALGSYFIRLRVSQKLHTSSQVVVGAIVGSLFCILWYTMW 237
>At1g33590.1 68414.m04158 disease resistance protein-related / LRR
protein-related contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 477
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 509 FKVFLYLTHIVYLFSLSPTGCTICH 435
F +F++ T +++L L+PTG CH
Sbjct: 5 FTLFIF-TFVIFLQCLNPTGAATCH 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,255
Number of Sequences: 28952
Number of extensions: 295628
Number of successful extensions: 806
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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