Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0943
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             111   4e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                99   3e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           98   4e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 77   9e-15
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.32 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)                       28   5.2  
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  111 bits (267), Expect = 4e-25
 Identities = 53/95 (55%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = +1

Query: 259 IDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 438
           +D+ L +F+T    +T++DAP H+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 439 TREHALLAFTLGVKQLIVGVNK--MVPLNHHTVSP 537
           TREHA+L  +LGV QLIV +NK  MV L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 51/74 (68%), Positives = 54/74 (72%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+   S      +
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59

Query: 225 DKLKAEREXVHNRY 266
            KLK E    H  Y
Sbjct: 60  SKLKFELPCTHKIY 73


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 42/84 (50%), Positives = 60/84 (71%)
 Frame = +1

Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
           T+++    F+T   + T++DAP H+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
           QTREHA+LA T GVK L++ VNKM
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKM 292



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +3

Query: 129 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +3

Query: 525 YSEPRFEEIKKEVSSYIKKIGYNP 596
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = +1

Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQ 366
           TIDIALWKFET KYYVT+IDAP HRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 189 MGKGSFKYAWVLDKLKAERE 248
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 301 VTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 405
           +T ID P H  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 60  THINIVVIGHVDSGKSTTTGHLIY 131
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 69   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 167
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 465 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 593
           H   + + RR ++N   +   + P+FE++K + +S  KKI  N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151


>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
          Length = 125

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +3

Query: 435 SNP*ACLARFHPRC-----QTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 593
           +N  A L RF   C     ++A RR ++N   +   + P+F+ +K + S   KKI  N
Sbjct: 25  NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82


>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 465 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 593
           H   ++A RR ++N   +   + P+F+ +K + S   KKI  N
Sbjct: 8   HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,283,453
Number of Sequences: 59808
Number of extensions: 366536
Number of successful extensions: 952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)