Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0943
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 161 3e-40
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 161 3e-40
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 153 7e-38
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 1e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 110 9e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 110 9e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 100 7e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 66 1e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 66 1e-11
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 62 3e-10
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 62 3e-10
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 62 3e-10
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.023
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 35 0.053
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.070
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.12
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.21
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.21
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 32 0.28
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.65
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.65
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.0
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.0
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 29 2.6
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 29 2.6
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 29 3.5
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 28 4.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 161 bits (392), Expect = 3e-40
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREHALLA TLGVKQLIV NKM
Sbjct: 132 QTREHALLAQTLGVKQLIVACNKM 155
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 57.6 bits (133), Expect = 7e-09
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +3
Query: 510 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 614
STEPP+SE RF EI EVS +IKKIGYNP AV FV
Sbjct: 157 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFV 191
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 161 bits (392), Expect = 3e-40
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREHALLA TLGVKQLIV NKM
Sbjct: 132 QTREHALLAQTLGVKQLIVACNKM 155
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 57.6 bits (133), Expect = 7e-09
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +3
Query: 510 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 614
STEPP+SE RF EI EVS +IKKIGYNP AV FV
Sbjct: 157 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFV 191
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 153 bits (372), Expect = 7e-38
Identities = 71/78 (91%), Positives = 75/78 (96%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TIDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNG
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNG 131
Query: 436 QTREHALLAFTLGVKQLI 489
QTREHALLA TLGVKQL+
Sbjct: 132 QTREHALLAQTLGVKQLV 149
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/46 (91%), Positives = 45/46 (97%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVA 393
TIDIALWKFET+KYY+TIIDAP HRDFIKNMITGTSQADCAVL+VA
Sbjct: 72 TIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 57.6 bits (133), Expect = 7e-09
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +3
Query: 510 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 614
STEPP+SE RF EI EVS +IKKIGYNP AV FV
Sbjct: 123 STEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFV 157
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 225 DKLKAER 245
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 110 bits (264), Expect = 9e-25
Identities = 52/84 (61%), Positives = 62/84 (73%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+DI FETS + ++DAP H+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 235 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 294
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QT+EHALL +LGV QLIV VNK+
Sbjct: 295 QTKEHALLLRSLGVTQLIVAVNKL 318
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 54 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 233
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 234 KAERE 248
+ ERE
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 110 bits (264), Expect = 9e-25
Identities = 52/84 (61%), Positives = 62/84 (73%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+DI FETS + ++DAP H+DFI NMITGTSQAD A+L+V A TGEFE G G
Sbjct: 253 TMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGG 312
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QT+EHALL +LGV QLIV VNK+
Sbjct: 313 QTKEHALLLRSLGVTQLIVAVNKL 336
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +3
Query: 54 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 233
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 234 KAERE 248
+ ERE
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 100 bits (240), Expect = 7e-22
Identities = 44/84 (52%), Positives = 60/84 (71%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+++ FET K + TI+DAP H+ F+ NMI G +QAD AVL+++A GEFE G + G
Sbjct: 174 TVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGG 233
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREH++L T GVK L++ VNKM
Sbjct: 234 QTREHSMLVKTAGVKHLVILVNKM 257
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +3
Query: 48 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 227
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 228 KLKAERE 248
ERE
Sbjct: 164 TNDEERE 170
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/24 (37%), Positives = 20/24 (83%)
Frame = +3
Query: 525 YSEPRFEEIKKEVSSYIKKIGYNP 596
+ E RF+EI+ +++ +++K+G+NP
Sbjct: 264 WEEERFKEIEGKLTPFLRKLGFNP 287
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI++A +E+ + D P H DFIKNMI GTSQ D AVL++AA G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 436 QTREHALLAFTLGVKQLIVGVNK 504
QT+EH +LA +GVK + + +NK
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTT 116
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/83 (44%), Positives = 50/83 (60%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI++A +E+ + D P H DFIKNMI GTSQ D AVL++AA G E
Sbjct: 95 TINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME------- 147
Query: 436 QTREHALLAFTLGVKQLIVGVNK 504
QT+EH +LA +GVK + + +NK
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTT 116
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 62.1 bits (144), Expect = 3e-10
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI+ ++ET+K + ID P H D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 151
Query: 436 QTREHALLAFTLGV--KQLIVGVNKM 507
QTREH LLA +GV ++V +NK+
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKV 177
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 222 LDKLKAEREXVH 257
L+ A+R H
Sbjct: 105 LEYETAKRHYAH 116
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 62.1 bits (144), Expect = 3e-10
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI+ ++ET+K + ID P H D+IKNMITG +Q + A+L+VAA G
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152
Query: 436 QTREHALLAFTLGV--KQLIVGVNKM 507
QTREH LLA +GV ++V +NK+
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKV 178
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 222 LDKLKAEREXVH 257
L+ A+R H
Sbjct: 106 LEYETAKRHYAH 117
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 62.1 bits (144), Expect = 3e-10
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
TI+ ++ET+K + ID P H D+IKNMITG +Q + A+L+VAA G
Sbjct: 100 TINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP------- 152
Query: 436 QTREHALLAFTLGV--KQLIVGVNKM 507
QTREH LLA +GV ++V +NK+
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKV 178
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 222 LDKLKAEREXVH 257
L+ A+R H
Sbjct: 106 LEYETAKRHYAH 117
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.9 bits (79), Expect = 0.023
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +1
Query: 301 VTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 480
+ +ID P H I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 481 QLIVGVNKMVPLNHHTVSPDLRKSRR 558
++I+ +NK +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 66 INIVVIGHVDSGKSTTT 116
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 34.7 bits (76), Expect = 0.053
Identities = 26/69 (37%), Positives = 31/69 (44%)
Frame = +1
Query: 301 VTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 480
VT +D P H F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 481 QLIVGVNKM 507
QL+V VNK+
Sbjct: 258 QLVVAVNKI 266
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.070
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI 146
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 503 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 375
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGID 149
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 405
T+++ K + + + + +ID+P H DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 185
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +1
Query: 295 YYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 474
Y + +ID P H DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 475 VKQLIVGVNKM 507
+ Q+I +NK+
Sbjct: 155 I-QIIPVINKI 164
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 21 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 131
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 21 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 131
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 147 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 147 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 241 SVXXYTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 405
S+ + I + Y + IID P H +F M AD V++V A G
Sbjct: 183 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 241 SVXXYTIDIALWKFETSKYYVTIIDAPXHRDFIKNMITGTSQADCAVLIVAAGTG 405
S+ + I + Y + IID P H +F M AD V++V A G
Sbjct: 58 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 66 INIVVIGHVDSGKSTTT 116
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 144 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREXVHNRYCSLEVRN 287
+DK ++ KE E+ K KYA KLK + + V N Y S+ +N
Sbjct: 188 LDKSRVKTASKERNELAK---KYAEQNAKLKLKLKEVKNNYASMLEKN 232
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 333 ISVXRSIND-GNIVLASFELPESNIDCVPXHAQPL 232
+S ++I+D GNI+ +F P DC+P P+
Sbjct: 197 VSSQQAIHDLGNILKLNFSYPPETRDCIPREVLPI 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,507
Number of Sequences: 27780
Number of extensions: 275584
Number of successful extensions: 887
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -