Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0942
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0007 + 212984-213949                                             29   4.1  
05_01_0444 + 3520227-3520398,3520493-3520673,3521465-3521618,352...    29   4.1  
02_04_0590 - 24154366-24155742                                         29   4.1  

>09_01_0007 + 212984-213949
          Length = 321

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +1

Query: 118 ILITSDDVTGGHTIRSTNETARAAAMENIIALDFTESAP 234
           I+I+SDD + GH + S+N+ A A +   +++L    SAP
Sbjct: 141 IVISSDD-SSGHIVISSNDGAGADSDAMVVSLSSNGSAP 178


>05_01_0444 +
           3520227-3520398,3520493-3520673,3521465-3521618,
           3522222-3522326,3522415-3522495,3522802-3522889,
           3523204-3523286,3524370-3524480,3524681-3524827
          Length = 373

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 633 KKGLVSARYRSSAIVTAMHTLPMPKTRSTTLVTHSHCFELTPAP 502
           +K + +A +  + I    H  P+P T    + ++ HC  L P P
Sbjct: 280 QKHIPNAIFLVATITHQSHLCPLPLTVQPIIWSYDHCLRLYPTP 323


>02_04_0590 - 24154366-24155742
          Length = 458

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 532 VRDQGGAAGLRHRQRVHRRHDGARAIPRADET 627
           VR  GGA G+R R R        +A PR +ET
Sbjct: 354 VRSSGGAGGVRWRSRSKLAARKKKAAPRGEET 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,745,662
Number of Sequences: 37544
Number of extensions: 233708
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)