Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0942
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50797| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-30) 31 1.0
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_55247| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-10) 30 1.4
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 30 1.8
SB_578| Best HMM Match : 7tm_1 (HMM E-Value=0.027) 30 1.8
SB_30157| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-40) 29 2.4
SB_27318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_22229| Best HMM Match : Arm (HMM E-Value=0) 29 3.2
SB_29120| Best HMM Match : 7tm_1 (HMM E-Value=1e-07) 29 3.2
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17) 28 5.5
SB_30549| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08) 28 5.5
SB_21570| Best HMM Match : AT_hook (HMM E-Value=2) 28 5.5
SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23) 28 7.3
SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15) 28 7.3
SB_42428| Best HMM Match : 7tm_1 (HMM E-Value=5.60519e-45) 28 7.3
SB_32155| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_29256| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05) 27 9.7
>SB_50797| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-30)
Length = 308
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 530 LCVTR-VVLRVFGIGSVCIAVTMALERYLALTRPFLY 637
+C++ + +R G +V + LERY+ +TRPF Y
Sbjct: 84 VCISMDMCMRFLGFSTVSHLTVLTLERYVRITRPFEY 120
>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 560 FGIGSVCIAVTMALERYLALTRPFLY 637
FGI SV +A+ RY+A++ PFLY
Sbjct: 677 FGIVSVWTMCLIAVNRYIAISHPFLY 702
>SB_55247| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-10)
Length = 330
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 518 SKQWLCVT-RVVLRVFGIGSVCIAVTMALERYLALTRPF 631
+ W C R V+ F + ++ V +A+ERYLA+ RPF
Sbjct: 108 TSDWRCKAYRTVIISFPVITINNLVVIAVERYLAVLRPF 146
>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1980
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
Frame = +2
Query: 554 RVFGIGSVCIA-------VTMALERYLALTRPFLY 637
R FG SVC++ V MA++RY A+TRP Y
Sbjct: 1633 RFFGPVSVCLSLASLFLLVAMAIDRYFAVTRPLAY 1667
>SB_578| Best HMM Match : 7tm_1 (HMM E-Value=0.027)
Length = 301
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 572 SVCIAVTMALERYLALTRPFLY 637
S+C+ + M+++R LAL +PF Y
Sbjct: 99 SICLVLVMSIDRLLALHKPFCY 120
>SB_30157| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-40)
Length = 312
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 557 VFGIGSVCIAVTMALERYLALTRPFLY 637
++ S+C ++++R+LA+T+PF Y
Sbjct: 50 IWASASICHLAVISIDRFLAVTKPFAY 76
>SB_27318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 506 AGVSSKQWLC-VTRVVLRVFGIGSVCIAVTMALERYLALTRPF 631
A + S W C TR+ + G +V + +A+ERY A+ PF
Sbjct: 116 ADMYSTTWSCRATRLPIHAMGSITVLNLLLLAIERYCAIYHPF 158
>SB_22229| Best HMM Match : Arm (HMM E-Value=0)
Length = 1050
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 572 SVCIAVTMALERYLALTRPFLY 637
S+ +A +A++RYLA+++PF Y
Sbjct: 601 SMLVASLVAIDRYLAISKPFFY 622
>SB_29120| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)
Length = 298
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 548 VLRVFGIGSVCIAVTMALERYLALTRPFLY 637
++ +FG ++C+ V M++ER A+ PF Y
Sbjct: 93 IIVLFGSLTICLVVVMSVERLGAICFPFFY 122
>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
Length = 1420
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 518 SKQWLCVTRVVLRVFGIGSVCIAVTMALERYLALTRPFLY 637
+K + V + +F + S+ V +A +RY+A+ RP Y
Sbjct: 486 AKVSIMVVEALSSLFSVASIFHMVALAYDRYVAVVRPMHY 525
>SB_30549| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)
Length = 290
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 557 VFGIGSVCIAVTMALERYLALTRPFLY 637
V G S + +A+ERY A TRP Y
Sbjct: 49 VAGYASAAFLIAIAIERYYATTRPHSY 75
>SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)
Length = 148
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 147 RSHYTID*RDSTRRRHGEHHSSGLHRVCTTKLLPV 251
+++ T+ RD + RH + GLH+ C K+L +
Sbjct: 22 KANTTLRSRDLEKHRHHHKENPGLHQQCLRKILKI 56
>SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)
Length = 335
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 536 VTRVVLRVFGIGSVCIAVTMALERYLALTRPFLY 637
V V V I ++ L+RYLA+T+PF Y
Sbjct: 70 VINVAYAVVLISGAANITSVTLDRYLAITKPFKY 103
>SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15)
Length = 456
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 569 GSVCIAVTMALERYLALTRPFLY 637
G+ CI + MA ERY+A+ PF Y
Sbjct: 255 GTCCIMLMMA-ERYMAVIHPFFY 276
>SB_42428| Best HMM Match : 7tm_1 (HMM E-Value=5.60519e-45)
Length = 311
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 563 GIGSVCIAVTMALERYLALTRPFLY 637
G S+ ++++RY+A+TRPF Y
Sbjct: 108 GTASILSLSCISVDRYMAITRPFTY 132
>SB_32155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 538 DQGGAAGLRHRQRVHRRHDGARAIPRADE 624
D G + HR RV R G R +P+A+E
Sbjct: 23 DSGAVLTVIHRGRVGRLRSGNRELPKAEE 51
>SB_29256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 506 AGVSSKQWLC-VTRVVLRVFGIGSVCIAVTMALERYLALTRPF 631
A + S W C TR+ + G +V + + +ERY A+ PF
Sbjct: 67 ADMYSTTWSCRATRLPVHAMGSITVLNLLLLGIERYCAIFHPF 109
>SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)
Length = 261
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 518 SKQWLCVTRVVLRVFGIGSVCIA--VTMALERYLALTRPF 631
+ W C + +FG+ + I +A+ERYLA+ RPF
Sbjct: 88 NSDWACKV-YHMPLFGLPCITITNLTVIAMERYLAIFRPF 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,457,101
Number of Sequences: 59808
Number of extensions: 263586
Number of successful extensions: 783
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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