Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0942
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical p...    28   4.9  
U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z78417-12|CAO78731.1|  318|Caenorhabditis elegans Hypothetical
           protein C35C5.10b protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 481 HIMPTKATTSLAASEVSSSKCFLLRTLLSPLLKAMIAIVFPII 353
           H+  T     L     S   CFL R +L  +  A  A+ FPI+
Sbjct: 124 HVTTTMQLMLLTMEGTSKKACFLFRLMLYFMPGAWFALAFPIL 166


>Z78417-11|CAE17739.1|  294|Caenorhabditis elegans Hypothetical
           protein C35C5.10a protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 481 HIMPTKATTSLAASEVSSSKCFLLRTLLSPLLKAMIAIVFPII 353
           H+  T     L     S   CFL R +L  +  A  A+ FPI+
Sbjct: 100 HVTTTMQLMLLTMEGTSKKACFLFRLMLYFMPGAWFALAFPIL 142


>U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical
           protein F39B3.2 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 569 GSVCIAVTMALERYLALTRP 628
           GSV I +T+ ++RYLAL +P
Sbjct: 121 GSVWIVLTLTIDRYLALCQP 140


>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 347 YRNNWEHYSYHRFEERREEGP 409
           Y + W HYSYH    R  E P
Sbjct: 375 YNSTWIHYSYHDENRREIESP 395


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
 Frame = -1

Query: 529 PLLRAXSGTCSVTTIVHIMPTKATTSLAA------SEVSSSKCFLLRTLLSPLLKAMIAI 368
           PLL+    +C VT  +   PT+A T+LA       ++ +S K F   +   P+LK+   +
Sbjct: 44  PLLKE---SCPVTCKL-CPPTEAPTTLAPCFDDKDTDCASFKQFCSNSKYIPMLKSFCPV 99

Query: 367 VFPIIPIAYTIFTTIPNNCR 308
              + P A T+  T   NC+
Sbjct: 100 TCNMCPGATTVMPTPNPNCQ 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,749
Number of Sequences: 27780
Number of extensions: 183469
Number of successful extensions: 507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)