Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0941
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    29   0.43 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.1  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   9.3  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -2

Query: 546 GIRSLIRLIFEHDLTPLQNVGLTRNLVYLLRTEDNAIFKKKIEKIVI 406
           GI    ++I E   TPL +   T+ +  LL+T+D+ + +K +E+I +
Sbjct: 361 GIDETSKIIEEVQPTPLTSESATKVIGVLLQTKDDLLTRKLMERIFL 407


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 570  KSPGLPITGIRSLIRLIFEHDLTPLQNVGLTRNLVYLLRTEDNAIFKKKIEKIVIQL 400
            K+P     GI ++ R     D TP+Q   L R L  L +T+D +  KK+ + +  Q+
Sbjct: 1184 KAPIFEAKGIETVRR-----DGTPVQQQLLRRCLEILFKTKDLSTVKKEFQNVCYQI 1235


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 206 AIAIRSYNVIYNVLKSTHAFFTTKSFFSYTILNSNLLIFFY 328
           +IA+      Y+V  + +  F  KS    TIL S +LIF Y
Sbjct: 322 SIALLVTLCFYDVKYARYPVFALKSLKDRTILGSCVLIFTY 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,857
Number of Sequences: 5004
Number of extensions: 39385
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)