Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0941
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0550 + 9407280-9407375,9407474-9407560,9408230-9408317,940...    28   5.5  

>03_02_0550 +
           9407280-9407375,9407474-9407560,9408230-9408317,
           9408871-9408962,9409068-9409132,9409220-9409308,
           9409402-9409479,9409567-9409660,9409745-9409811,
           9409907-9409970,9410096-9410136,9410221-9410412
          Length = 350

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 176 QIFHGVCRQKHLFYKVNPIKGCK 108
           QI+H  C    +FYK NP+K  K
Sbjct: 102 QIYHLACPASPIFYKHNPVKTIK 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,808
Number of Sequences: 37544
Number of extensions: 214322
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)