Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0941
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42556| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-06)                 29   3.2  
SB_54208| Best HMM Match : fn3 (HMM E-Value=0)                         29   4.3  
SB_44277| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   5.2  
SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12)                    28   7.5  
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)           27   9.9  
SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_42556| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-06)
          Length = 294

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = +3

Query: 3   VVLTCVEDIHRETFSFYKITKVWLSRALGLIGLYALTSLDRVDLIKQMFLPTNAMKYLQL 182
           + + CV  I     +   I  +W + AL     Y L SL  +DL     +    + YL L
Sbjct: 20  LAVNCVSAIATSLLNTLVIMAIWKTPALHTPSRYLLASLSILDLFNGCVVQPGFIGYLAL 79

Query: 183 VVLEACTMQLQL 218
           +  + C  +  L
Sbjct: 80  LFADWCDTKYAL 91


>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1292

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 161  RHEIFATRGFRSMYNAIAIRSYNVIYNVLKSTHAFFTT 274
            R ++F T   RSM   I+ R++++IY +   T +   T
Sbjct: 1110 RPDLFDTSALRSMIYTISTRAHSMIYTISTRTQSMINT 1147


>SB_44277| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 23.8 bits (49), Expect(2) = 5.2
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = -1

Query: 217 NCNCIVHASKT----TSCKYFMAFVGKNICF 137
           NC  I  A K     T CK+  A  GK IC+
Sbjct: 256 NCWFIEKAPKVYRIITECKFVKAGAGKTICY 286



 Score = 23.0 bits (47), Expect(2) = 5.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 157 VGKNICFIRSTLSRD 113
           +G N CFIRST++ +
Sbjct: 317 LGINACFIRSTMANE 331


>SB_6196| Best HMM Match : rve (HMM E-Value=3.7e-12)
          Length = 444

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 242 HYILHYKI*LQLHCTCF*NHELQIFHGVCR 153
           HYI  + + L+LH   + N E Q+F  VC+
Sbjct: 151 HYISRFGVPLELHSDQWRNFESQVFLEVCK 180


>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
          Length = 1071

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 247 QDIIYYIIRSNCNCIVHASKTTS----CKYFMAFVGKNICFIR 131
           Q I  Y+   +C  IV+A+   +    C+Y  AF GKNIC  R
Sbjct: 74  QHIAVYL--QHCKLIVNATLCPTQVGFCRYNNAFFGKNICDAR 114


>SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 149 FAYKRHEIFATRGFRSMYNAIAIRSYNVIYNVLKSTHAFFTTKSFFSYTI 298
           +AY   +++       +Y A +I     +YN    THAF  T  +++Y I
Sbjct: 79  YAYSITDLYYAYSITDLYYAYSITD---LYNADSKTHAFNITGLYYAYII 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,899,878
Number of Sequences: 59808
Number of extensions: 264869
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)