Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0941
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division ...    29   3.7  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   4.9  

>U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division
           cycle related protein6 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 597 RRRVVAEESKSPGLPITGIRSLIRLIFEHDLTPLQNVGL 481
           + R++ ++SK PG P+ G R ++ +I     +PL    L
Sbjct: 384 KSRMIPDDSKVPGTPVNGCREVLGIINNVYSSPLARARL 422


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 209  LHCTCF*NHELQIFHGVCRQKHLFYKVNPIKGCKCVQP 96
            +H  CF   E  +F G C++  +  K+  ++  K ++P
Sbjct: 1005 VHGICFCKEEFTLFEGKCQRLRIIEKLTVLESKKLIKP 1042


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,105,385
Number of Sequences: 27780
Number of extensions: 212104
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)