Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0939
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   1.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.0  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   4.0  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    26   4.0  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   7.0  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 534 FPSLAKYPSNQKVLIMMPQFF-LIVRCMSSV 445
           F +L+ + +NQ VL+  P FF L++R + S+
Sbjct: 556 FRNLSHFEANQNVLVQNPDFFPLLIRVVKSL 586


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 393  WKRQFLSRVPKPQVPCVTVALDRPVKSNINCMMGRFNGCLVIFWI 259
            W++     + K  +P V++A     KSN N +   + G   + WI
Sbjct: 2770 WRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHELAWI 2814


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +2

Query: 284 LNLPIIQLILDLTGRSRATVTQGTCGFGTLERNCLFQRFLRLTPSQYILIWEIVT 448
           +N+P+   +   +  ++    QG  GFG++  + LF R ++L   + +L W+I T
Sbjct: 763 VNIPLATTLTTSSQLTKWYPIQGGIGFGSVRISILF-RSMKLKIPRNLLGWDIGT 816


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 311 LDLTGRSRATVTQGTCGFGTLERNCLFQRFLRLTPSQY 424
           +DL   ++         FG+ E NCL+   + L P  Y
Sbjct: 246 IDLLSSTKVAAKSQFTLFGSRETNCLYYAVIYLAPGDY 283


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 190 SDSSFENRRCEARSKQKVCSQCTNPENNEASIESS---HHTVDIGLDRP 327
           S S F N+R +  +K+++C    +P  NE  I+ S   H + D   D P
Sbjct: 38  STSGFFNKRFQNYTKRQICYNVASP--NEPPIDFSFLMHKSTDENPDTP 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,065
Number of Sequences: 5004
Number of extensions: 52576
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)