Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0939
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0560 - 23288078-23288370,23288448-23288733                       31   1.0  
08_02_1178 + 24958623-24959894                                         30   1.4  
01_01_0357 - 2816650-2817897                                           30   1.8  
07_01_1127 + 10456895-10457388,10457488-10458112                       29   4.1  
01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653...    28   5.5  
06_03_0037 + 15773444-15773647,15773862-15774367,15775011-157752...    27   9.6  
05_01_0227 - 1684597-1684727,1685003-1685100,1685176-1685270,168...    27   9.6  
04_03_0150 + 11877714-11878487,11880928-11881245                       27   9.6  

>01_05_0560 - 23288078-23288370,23288448-23288733
          Length = 192

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 182 ADHPILPSKIDDVKLDPNRRYVRSVPIQKITRHP 283
           A H +L S  DDV  DP+ RYV S P   +   P
Sbjct: 126 AGHYVLSSPPDDVDHDPDHRYVFSSPHDDVDHDP 159


>08_02_1178 + 24958623-24959894
          Length = 423

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 408 KRRKRWKRQFLSRVPKPQVPCVTVALDRP 322
           +RR RW+   LSR+  P +PC+  + + P
Sbjct: 52  ERRARWELSVLSRLAHPHLPCLLGSAETP 80


>01_01_0357 - 2816650-2817897
          Length = 415

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +2

Query: 134 PLWLYQGDNIPRAXST-ADHPILPSK--IDDVKLDPNRRYVRSVPIQKITRHPLNLPIIQ 304
           PL L     + RA       P+LP    I  ++  P RR   +V   +  RHP  LP+ +
Sbjct: 186 PLVLRHAQQLGRARRVPGSPPLLPGGRGIIVIRRRPPRRGALAVHRPRRERHPRRLPVQE 245

Query: 305 LILDLTGRSRAT 340
           L +++ G + AT
Sbjct: 246 LSVEVGGTATAT 257


>07_01_1127 + 10456895-10457388,10457488-10458112
          Length = 372

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 368 TLERNCLFQRFLRL-TPSQYILIWEIVTDDMHRTIKKNCGIIMST 499
           T+++ C    FL+  TP+  I +  +   D  RT++K  G+I  T
Sbjct: 25  TVQQQCKLSEFLKTETPTFAIAVEPMEASDWLRTVEKKLGLIQCT 69


>01_01_0836 +
           6527902-6528218,6529280-6529632,6529722-6529889,
           6530004-6530051,6530142-6530372,6530435-6530548,
           6530638-6530723
          Length = 438

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 456 MSSVTISHINIYWLGVKRRKRWKRQFLSRVPKPQVPCVTVALDRPVKSNIN 304
           ++ V  S + IY LGV   K W R+     PK       VAL+  + SN N
Sbjct: 359 LAFVNSSSLFIYILGVLHSKSWVRRCDDPQPKAHCRPYAVALNSNLLSNSN 409


>06_03_0037 +
           15773444-15773647,15773862-15774367,15775011-15775246,
           15775483-15775685,15775989-15776279,15776997-15777084,
           15777539-15777861
          Length = 616

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 304 LYDGKIQWMPRYFLDWYTANIPSV 233
           LYD + +W+P +F + Y  ++P+V
Sbjct: 297 LYDIRHRWVPAFFKEDYCGSVPNV 320


>05_01_0227 -
           1684597-1684727,1685003-1685100,1685176-1685270,
           1685360-1685545,1686185-1686298,1686583-1686684,
           1686811-1687096,1687242-1687291,1687351-1687479,
           1687590-1687724,1688163-1688165
          Length = 442

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 573 IKKCTPKSFVSGTFPSLAKYPSNQKVLIMMPQFFLIVRCMSSVTISHINIYW 418
           I KCT   F   T  +++   +  KV    P+F LI+ C+SS+  S +   W
Sbjct: 358 IVKCTTSIFREDTMLAVSILENLAKV----PRFDLIIMCLSSMHKSELRKVW 405


>04_03_0150 + 11877714-11878487,11880928-11881245
          Length = 363

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +2

Query: 155 DNIPRAXSTADHPILPSKIDDVKLDPNRRYVRSVPIQKITRHPLNLPIIQLILDLTGRSR 334
           D+IP     ADH +L    + + L  +   +R   +  +TRH  +LP +  +L    R R
Sbjct: 166 DDIPEL---ADHTMLALTPEGLLLLLHEPSLRLHLLNPLTRHRTDLPPVTALLTPEWRRR 222

Query: 335 ATVTQGTCGFG 367
           A+   G  G G
Sbjct: 223 ASWRLGAHGVG 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,046
Number of Sequences: 37544
Number of extensions: 338366
Number of successful extensions: 997
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)