Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0939
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50257| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14) 34 0.11
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35) 32 0.46
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 31 0.60
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 30 1.4
SB_13953| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_5507| Best HMM Match : TP2 (HMM E-Value=4) 29 4.2
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15) 27 9.8
>SB_50257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 152 GDNIPRAXSTADHPILPSKIDDVKLDPNRRYVRSVPIQKITRHPLNL 292
G+N+P A HPI + ID KL Y++ VP ITR+ NL
Sbjct: 40 GENVPLQNCRAKHPISMATIDFNKLHGENSYIK-VPGNGITRYLFNL 85
>SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)
Length = 644
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 152 GDNIPRAXSTADHPILPSKIDDVKLDPNRRYVRSVPIQKITRHPLNL 292
G+N+P A HPI + ID KL Y++ VP ITR+ NL
Sbjct: 548 GENVPLQNCRAKHPISMATIDFNKLHGENSYIK-VPGNGITRYLFNL 593
>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
Length = 681
Score = 31.9 bits (69), Expect = 0.46
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 163 SSCXQYCRPSDSSFENRRCEARSKQKVC 246
++C +YC+ D + N RCE + +K+C
Sbjct: 214 TNCIKYCKEKDDNSGNYRCENSTGEKIC 241
Score = 31.9 bits (69), Expect = 0.46
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 163 SSCXQYCRPSDSSFENRRCEARSKQKVC 246
++C +YC+ D + N RCE + +K+C
Sbjct: 248 TNCSKYCKEKDDNSGNYRCENSTGEKIC 275
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVC 246
+C +YC+ D + N RC+ + +K+C
Sbjct: 113 NCSKYCKEKDDNSGNYRCDNSTGEKIC 139
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVC 246
+C +YC+ D + N RC+ + +K+C
Sbjct: 147 NCSKYCKEKDENSGNYRCDNSTGEKIC 173
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVC 246
+C +YC+ D + N RC+ + +K+C
Sbjct: 181 NCSKYCKEKDENSGNYRCDNSTGEKIC 207
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVC 246
+C +YC D F RC+ + +K+C
Sbjct: 79 NCSKYCEEKDDKFGPYRCDNSTGEKIC 105
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVC 246
+C +YC+ D + N RCE + +K+C
Sbjct: 2224 NCSKYCKEKDDNSGNYRCENSTGEKIC 2250
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVC 246
+C +YC+ D + N RC+ + +K+C
Sbjct: 2088 NCSKYCKEKDDNSGNYRCDNSTGEKIC 2114
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 163 SSCXQYCRPSDSSFENRRCEARSKQKVC 246
++C +YC+ D + N RC+ + +K+C
Sbjct: 2155 TNCIKYCKEKDDNSGNYRCDNSTGKKIC 2182
Score = 29.5 bits (63), Expect = 2.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVC 246
+C +YC+ D + + RCE + +K+C
Sbjct: 2258 NCSKYCKEKDDNSGHYRCENSTGEKIC 2284
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVC 246
+C +YC D F RC+ + +K+C
Sbjct: 2020 NCSKYCEEKDDKFGPYRCDNSTGEKIC 2046
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 163 SSCXQYCRPSDSSFENRRCEARSKQKVC 246
++C +YC+ + N RC+ + +K+C
Sbjct: 2121 TNCIKYCKEKGDNSGNYRCDNSTGEKIC 2148
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 163 SSCXQYCRPSDSSFENRRCEARSKQKVC 246
++C +YC+ + N RC+ + +K+C
Sbjct: 2189 TNCIKYCKEKGDNSGNYRCDNSTGEKIC 2216
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVC 246
+C +YC+ + N RC+ + +K+C
Sbjct: 2054 NCSKYCKEKGDNSGNYRCDNSTGEKIC 2080
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 93 GAR*YVQRDKLAXNRYGCIKVTIFLVRSVLQTIRFFLRKST 215
GA YV+ L NR CI+V + + S+ Q +RFFL T
Sbjct: 2404 GAYRYVRTSWLPCNR--CIQVCTYALASLQQAVRFFLAADT 2442
>SB_13953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 439
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 232 KQKVCSQCTNPENNEASIESSHHTVDIGLDRPI 330
K+ VCSQ ASIE + D+ LD+P+
Sbjct: 337 KETVCSQVAEKTYQAASIEGISYRFDVKLDKPL 369
>SB_5507| Best HMM Match : TP2 (HMM E-Value=4)
Length = 524
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 100 RAPCRWWPVGRLDEPLARS 44
R+ CRWWP GR ARS
Sbjct: 268 RSSCRWWPRGRAGYRSARS 286
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = +1
Query: 37 CSGFVPEVHPADLQATTDTAPDNTYSATSWPXTAMAVSR*QYSSCXQYCRPSDSSFE--- 207
C+ + ++ + DT P S T P +A + Q S+ + + SDS
Sbjct: 64 CTAKLSDIDSNKDSSAVDTGPKAKDSVTKEPASAKPLKSWQKSTSPEANKDSDSESRRPA 123
Query: 208 NRRCEARSKQKVCSQCTNPENNEASIES 291
N R A S +K S N E E S +S
Sbjct: 124 NPRPFALSSKKPRSPNDNAERKETSADS 151
>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = -3
Query: 555 KSFVSGTFPSLAKYPSNQKVLIMMPQFFLIVRCMSSVTISHINIYWLGVKRRKRWKRQFL 376
K+F G F L P ++IM + I+ C++ + S IN L R R KR+
Sbjct: 176 KTFTLGVFVLLYFVP----LVIMSVSYVKIISCLNEDSRSQINECMLDCADRSRAKREMA 231
Query: 375 SRVPKPQVPCVTV 337
+ + V VTV
Sbjct: 232 AARIRRNVHIVTV 244
>SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15)
Length = 402
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 166 SCXQYCRPSDSSFENRRCEARSKQKVCS 249
SC + R SDS F + C+ RS CS
Sbjct: 174 SCKETERKSDSGFSSASCDYRSHSASCS 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,137,019
Number of Sequences: 59808
Number of extensions: 403106
Number of successful extensions: 1146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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