Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0939
         (641 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC060865-1|AAH60865.1|  599|Homo sapiens zinc finger protein 530...    30   8.0  
AC003682-5|AAC24609.1|  557|Homo sapiens R28830_2 protein.             30   8.0  
AB040941-1|BAA96032.1|  573|Homo sapiens KIAA1508 protein protein.     30   8.0  

>BC060865-1|AAH60865.1|  599|Homo sapiens zinc finger protein 530
           protein.
          Length = 599

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 163 SSCXQYCRPSDSSFENRRCEARSKQKVCSQCTNPENNEASIESSHHTVDIGLDRPIE 333
           S C +    S   F +RR   ++K   CS+C    + +  +   H TV  G +RP E
Sbjct: 438 SECGKVFSQSSGLFRHRRAHTKTKPYECSECEKSFSCKTDL-IRHQTVHTG-ERPYE 492


>AC003682-5|AAC24609.1|  557|Homo sapiens R28830_2 protein.
          Length = 557

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 163 SSCXQYCRPSDSSFENRRCEARSKQKVCSQCTNPENNEASIESSHHTVDIGLDRPIE 333
           S C +    S   F +RR   ++K   CS+C    + +  +   H TV  G +RP E
Sbjct: 396 SECGKVFSQSSGLFRHRRAHTKTKPYECSECEKSFSCKTDL-IRHQTVHTG-ERPYE 450


>AB040941-1|BAA96032.1|  573|Homo sapiens KIAA1508 protein protein.
          Length = 573

 Score = 29.9 bits (64), Expect = 8.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 163 SSCXQYCRPSDSSFENRRCEARSKQKVCSQCTNPENNEASIESSHHTVDIGLDRPIE 333
           S C +    S   F +RR   ++K   CS+C    + +  +   H TV  G +RP E
Sbjct: 412 SECGKVFSQSSGLFRHRRAHTKTKPYECSECEKSFSCKTDL-IRHQTVHTG-ERPYE 466


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,197,081
Number of Sequences: 237096
Number of extensions: 1826131
Number of successful extensions: 4684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4684
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)