Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0939
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100656-6|AAF99961.1| 240|Caenorhabditis elegans Hypothetical ... 31 0.93
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 29 2.8
AF201079-1|AAF25647.1| 279|Caenorhabditis elegans VAB-2 protein. 28 4.9
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 28 4.9
AC024759-9|AAK68436.1| 279|Caenorhabditis elegans Variable abno... 28 4.9
AC006829-1|AAF60923.1| 258|Caenorhabditis elegans Hypothetical ... 28 4.9
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 27 8.6
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 27 8.6
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 27 8.6
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 27 8.6
>AF100656-6|AAF99961.1| 240|Caenorhabditis elegans Hypothetical
protein F49F1.7 protein.
Length = 240
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 160 YSSCXQYCRPSDSSFENRRCEARSKQKVCSQCTNPENNEASIESSHHTVDIGLDRPIESH 339
+ C +Y P S E +C + C C NP EAS+ +++ + IG R +++
Sbjct: 100 WPECPKYQVPC-SETERIKCP-----RSCDACGNPSTKEASVTTTNGHLQIGTTRRLQAT 153
Query: 340 RNTR 351
+ T+
Sbjct: 154 QTTK 157
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 193 DSSFENRRCEARSKQKVCSQCTNPENNEASIESSHHTVDIGLDRP 327
D +NRR R K+ + + + +NN+A S T DIG P
Sbjct: 1183 DQPNQNRRYNLRKKKTINYEEKDDDNNQAQTVSRSQTWDIGRTMP 1227
>AF201079-1|AAF25647.1| 279|Caenorhabditis elegans VAB-2 protein.
Length = 279
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 184 RPSDSSFENRRCEARSKQKVCSQCTNPENNE 276
R ++ +EN CE RSK K +CT P E
Sbjct: 69 RVTEEEYEN--CERRSKAKELGRCTQPYQEE 97
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 211 RRCEARSKQKVCSQCTNPENNEASIESSHHT-VDIGLDRPI 330
++ +A +QK+ P+ +E E H T D GLD I
Sbjct: 60 KKSQAEKRQKLMESLVGPQVDEMDFEPEHKTFADFGLDERI 100
>AC024759-9|AAK68436.1| 279|Caenorhabditis elegans Variable
abnormal morphology protein2 protein.
Length = 279
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 184 RPSDSSFENRRCEARSKQKVCSQCTNPENNE 276
R ++ +EN CE RSK K +CT P E
Sbjct: 69 RVTEEEYEN--CERRSKAKELGRCTQPYQEE 97
>AC006829-1|AAF60923.1| 258|Caenorhabditis elegans Hypothetical
protein Y9C12A.1 protein.
Length = 258
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 276 LVIFWIGTLRTYLLFGSSFTSSIFEGRIG 190
LV +W GTLR L+ G+ F + +G+ G
Sbjct: 187 LVAWWSGTLRLLLILGNIFYHAFVDGQGG 215
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 266 SGLVHCEHTFCLDRASHRRFSKEESDGLQY*XHEEYCHLDTAIAVXGQL 120
S VH EH +D+ R+ + S L H E C I V QL
Sbjct: 349 SECVHVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 266 SGLVHCEHTFCLDRASHRRFSKEESDGLQY*XHEEYCHLDTAIAVXGQL 120
S VH EH +D+ R+ + S L H E C I V QL
Sbjct: 349 SECVHVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 266 SGLVHCEHTFCLDRASHRRFSKEESDGLQY*XHEEYCHLDTAIAVXGQL 120
S VH EH +D+ R+ + S L H E C I V QL
Sbjct: 349 SECVHVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 266 SGLVHCEHTFCLDRASHRRFSKEESDGLQY*XHEEYCHLDTAIAVXGQL 120
S VH EH +D+ R+ + S L H E C I V QL
Sbjct: 349 SECVHVEHGISMDQLRKRKTLNQSSTDLSAKSHNEDCVCPECIPVVEQL 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,716
Number of Sequences: 27780
Number of extensions: 295556
Number of successful extensions: 963
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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