Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0939
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.7  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = -2

Query: 370 GSKTAGPLCYGGSRSAGQVQYQLYDGKI 287
           G +T  P+C G + ++ ++  ++Y+G +
Sbjct: 25  GIQTLQPICVGETGTSQKIIDEVYNGNV 52



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 330 DRPVKSNINCMMGRFN 283
           D  V+S + CMM +FN
Sbjct: 56  DENVQSYVECMMKKFN 71


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 316 VQYQLYDGKIQWMPRYFLDWYTANIPS--VW 230
           V+   YD K++W P+ +      ++PS  +W
Sbjct: 81  VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIW 111


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 316 VQYQLYDGKIQWMPRYFLDWYTANIPS--VW 230
           V+   YD K++W P+ +      ++PS  +W
Sbjct: 81  VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIW 111


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 91  CRWWPVGR 68
           CR+WP GR
Sbjct: 200 CRFWPTGR 207


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 316 VQYQLYDGKIQWMPRYFLDWYTANIPS--VW 230
           V+   YD K++W P+ +      ++PS  +W
Sbjct: 77  VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIW 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,638
Number of Sequences: 438
Number of extensions: 4032
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)