Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0939
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54450.1 68418.m06781 hypothetical protein contains Pfam prof...    29   2.6  
At5g52790.1 68418.m06551 CBS domain-containing protein-related c...    29   2.6  
At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    28   6.1  
At5g55820.1 68418.m06956 expressed protein                             28   6.1  
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    28   6.1  
At1g72300.1 68414.m08358 leucine-rich repeat transmembrane prote...    28   6.1  
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont...    27   8.0  

>At5g54450.1 68418.m06781 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 368

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +1

Query: 217 CEARSKQKVCSQCTNPENNEASIESSHHTVDIGLDRPIESHRNTRDLRFWNP 372
           C+ +    V   C++PE+ +  +        +   RP  SH +  ++R  NP
Sbjct: 132 CQTQIITNVAMSCSSPEDEDCVVAVKFLGPQLSFCRPARSHSDWTNIRIENP 183


>At5g52790.1 68418.m06551 CBS domain-containing protein-related
           contains Pfam profile PF01595: Domain of unknown
           function, weak hit to PF00571: CBS domain
          Length = 500

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +2

Query: 218 VKLDP-NRRYVRSVPIQKITRHPLNLPIIQLI-LDLTGRSRATVTQGT 355
           +K+ P +   +R +PI+++ +  LNLP+  ++ +  TGRS      GT
Sbjct: 262 IKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSHMAAVVGT 309


>At5g61240.1 68418.m07681 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 380

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 456 MSSVTISHINIYWLGVKRRKRWKRQFLSRVPKPQV 352
           MSS  I H+NIY + + R  RW +  L  V  P++
Sbjct: 163 MSSFQILHLNIYSVVITRNLRWNK--LQDVIPPEI 195


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 232 KQKVCSQCTNPENNEASIESSHHTVDIGLDRPIESHRNTRDLRFWNPRE 378
           +Q + S   NP   +   E   H +   L R + +H + +D+   +PR+
Sbjct: 145 RQDLTSVVNNPLEEQLLEEEPQHNLSHNLVRQVSNHSHEQDVNIASPRD 193


>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +2

Query: 428 LIWEIVTDDMHRTIKKNCGIIMSTF*FEGYFARLGKVPETKDFGVH 565
           LI EI++DD  +TI+++  I+ +   F+G +++      TK +  H
Sbjct: 149 LIKEILSDDSIKTIRESMLILANAVYFKGAWSKKFDAKLTKSYDFH 194


>At1g72300.1 68414.m08358 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3641252 from [Malus x
           domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
          Length = 1095

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 365 QNRRSLVLRWLSIGRSSPISTV*WEDSMDASLFSGL 258
           Q+R SL+  W S   SSP+S + W  S+D   + G+
Sbjct: 51  QDRDSLL--WFSGNVSSPVSPLHWNSSIDCCSWEGI 84


>At2g33080.1 68415.m04056 leucine-rich repeat family protein
           contains leucine rich-repeat domain Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 740

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 303 CMMGRFNGCLVIFWIGTLRTYLLFGSSFTSSIFEGRIG 190
           C+ G  N    +FW   LR   L  ++FTS+ F    G
Sbjct: 85  CLSGTLNPNSSLFWFHQLRFLNLSHNNFTSTSFPSEFG 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,339
Number of Sequences: 28952
Number of extensions: 275491
Number of successful extensions: 802
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)