Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0938
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     29   1.0  
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    29   1.4  
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987...    29   1.4  
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635...    26   9.5  

>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 282 GDLDPARXLRSSCGVILKDKSGVMMKNPDINIIIDTRRPY*LFERQLKSLNSQHW 118
           G  +P+R L   C +      G+  K PD+ ++++  R Y      LK L++  W
Sbjct: 295 GFCEPSRDLNKVCTMHANCCIGLQSKVPDLRVMMEDWRSYLSLPPSLKRLSALAW 349


>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = -2

Query: 342 LGRAAGSVRGGPKHVVFE-----GVGDL-DPARXLRSSCGVILKDKSGVMMKNPD 196
           LGR+AGS +G PK  V+E     G G L  PA+    +  ++L   +    K P+
Sbjct: 402 LGRSAGSTKGKPKIEVYEKDRKKGAGALITPAKTYNPAADLVLGQSTEETPKKPE 456


>03_02_0998 -
           13097675-13098079,13098307-13098441,13098522-13098722,
           13099060-13099359,13099449-13099649,13099932-13100096,
           13100170-13100349,13100896-13100937,13101040-13101117
          Length = 568

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = -2

Query: 342 LGRAAGSVRGGPKHVVFE-----GVGDL-DPARXLRSSCGVILKDKSGVMMKNPD 196
           LGR+AGS +G PK  V+E     G G L  PA+    +  ++L   +    K P+
Sbjct: 402 LGRSAGSTKGKPKIEVYEKDRKKGAGALITPAKTYNPAADLVLGQSTEETPKKPE 456


>09_04_0627 -
           19061106-19061474,19062067-19062909,19063395-19063501,
           19064301-19064332,19064384-19064663,19065092-19065475,
           19066730-19066803,19067244-19067310,19067415-19067486,
           19067941-19068000,19068683-19068734,19068874-19068943,
           19069110-19069372
          Length = 890

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 312 GPKHVVFEGVGDLDPARXLRSSCGVILKDKSGVMMKNPDINIIIDTR 172
           G +H  +  VG    AR   S+   ILK+ SG+ +K   ++II D R
Sbjct: 530 GLEHKAYRRVG---MARDFTSTVHSILKNHSGIGVKRLKLDIIYDHR 573


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,567,232
Number of Sequences: 37544
Number of extensions: 120482
Number of successful extensions: 302
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)