Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0938
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)            27   7.4  
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_40388| Best HMM Match : Kinesin (HMM E-Value=0)                     26   9.8  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 233  RMTPQXERRXRAGSRSPTPSK 295
            R TP+  RR R   RSP+P K
Sbjct: 1076 RRTPEDRRRSRGSRRSPSPPK 1096


>SB_7819| Best HMM Match : LBP_BPI_CETP_C (HMM E-Value=0.04)
          Length = 444

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 42  YFRIASVFLLFTQPRT*XRXARRCSASVVNLAILADA 152
           YFRIA +F L +   +     R C A  + LA+ ++A
Sbjct: 178 YFRIAKLFALLSHLSSASMHLRACFAITIALALASEA 214


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 26  RSPPDVFSNRFCLFTFYTTEDIVTXRASV 112
           + PP V S++  +F FYT  ++V+  A +
Sbjct: 259 KMPPMVLSDKIVMFQFYTGRNLVSQGALI 287


>SB_40388| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 500

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 2   VYIELRGRRSPPDVFS--NRFCLFTFYTTEDIV 94
           +Y+EL+ RR+P D  +  N  C+F +   +DIV
Sbjct: 391 LYLELQARRNPKDDINILNEHCIFNY--EQDIV 421


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 318  RGGPKHVVFEGVGDLDPARXLRSSCGVILKD 226
            RGG   VVFE VG ++P     S+ G +  D
Sbjct: 2263 RGGKGGVVFESVGGINPMNFGASAGGGLYSD 2293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,431
Number of Sequences: 59808
Number of extensions: 136695
Number of successful extensions: 269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)