Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0938
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    27   3.7  

>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 47  SNRFCLFTFYTTEDIVTXRASVQCQCCEFSDFS 145
           +N FC  TFYTT       AS    C + SD S
Sbjct: 14  ANGFCTSTFYTTAQKTQYCASTCSLCSDSSDSS 46



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 47  SNRFCLFTFYTTEDIVTXRASVQCQCCEFSDFS*RSKS 160
           +N FC  +FYTT  I T   +  C  C  S  S  S S
Sbjct: 143 ANGFCTSSFYTTA-IKTQYCAATCSLCSSSSDSSSSSS 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,175,155
Number of Sequences: 27780
Number of extensions: 103950
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)