Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0937
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   5.0  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   8.7  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 565 TDLISFSTCFNKAAFHFSAI-FYLPLCLSF 479
           T  ++   CFN   + F+ I F+  +C  F
Sbjct: 55  TSSVTLHVCFNSYMYAFTHIFFFFAICCDF 84


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 484 SFFLNEDLFYFQLKLLGHEF 425
           +FF+NE   YF +    +EF
Sbjct: 127 TFFVNEKQSYFHIATTSNEF 146


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 567 KLTSFLLALVSTKQLSIFQLSFTFLC 490
           K     + ++S  QL IFQL    LC
Sbjct: 191 KTLKLSINIISLVQLWIFQLYLLILC 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,212
Number of Sequences: 336
Number of extensions: 3111
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)