Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0937
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 104 1e-23
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 69 6e-13
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 49 5e-07
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 48 9e-07
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 47 2e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 46 5e-06
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 45 1e-05
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 41 2e-04
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 39 7e-04
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 39 7e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 38 0.001
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 38 0.002
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 36 0.005
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 35 0.009
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 35 0.012
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 35 0.012
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 34 0.015
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 33 0.047
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 28 1.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 1.8
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 27 3.1
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.4
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 7.1
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 25 9.4
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 9.4
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 104 bits (249), Expect = 1e-23
Identities = 45/85 (52%), Positives = 67/85 (78%)
Frame = +1
Query: 244 FEFEEYEVKLVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVG 423
++ +E+ +++DTAGQDEYSI ++S+ HGYVLVYSITS SF++V+I+ DK+L+ G
Sbjct: 49 YKGQEFATEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTG 108
Query: 424 KIHVPIVLVGNKTDLHLERKISTEE 498
VPIV+VGNK+DLH++R ++ EE
Sbjct: 109 TEWVPIVVVGNKSDLHMQRAVTAEE 133
Score = 66.5 bits (155), Expect = 3e-12
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +2
Query: 107 PSKQRKIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTFTKYIR 244
P K R+IA++G RSVGKSSL +Q+VE FV+SY PTIENTF+K I+
Sbjct: 3 PIKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIK 48
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 68.9 bits (161), Expect = 6e-13
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +1
Query: 271 LVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVGKIHVPIVLV 450
++DTAGQ+EYS QY G++LVY+ITS SF + Y ++L + K P+VLV
Sbjct: 60 VLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLV 119
Query: 451 GNKTDLHLERKISTEE 498
NK DL ER +S E
Sbjct: 120 ANKCDLEAERVVSRAE 135
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 113 KQRKIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTFTKYIRLNSRNMKL 268
++ K+ ++G VGKS+L IQ ++ FVD YDPTIE+++ K ++ L
Sbjct: 7 REYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALL 58
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 49.2 bits (112), Expect = 5e-07
Identities = 30/82 (36%), Positives = 44/82 (53%)
Frame = +1
Query: 253 EEYEVKLVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVGKIH 432
++ + ++ DTAGQ+ Y Y G ++VY IT SF V +L + +
Sbjct: 57 KKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADS-N 115
Query: 433 VPIVLVGNKTDLHLERKISTEE 498
+ I+LVGNKTDL R +STEE
Sbjct: 116 IVIMLVGNKTDLLHLRAVSTEE 137
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 48.4 bits (110), Expect = 9e-07
Identities = 26/79 (32%), Positives = 45/79 (56%)
Frame = +1
Query: 262 EVKLVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVGKIHVPI 441
++++ DTAGQ+++ Y G VLVY +T+ SF+ + + M + +
Sbjct: 63 KLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPST-ICV 121
Query: 442 VLVGNKTDLHLERKISTEE 498
VL G+K+DL +R++STEE
Sbjct: 122 VLAGSKSDLQNQRQVSTEE 140
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 47.2 bits (107), Expect = 2e-06
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +1
Query: 232 QVHSFEFEEYEVKLV--DTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDK 405
++ +FE E VKL DTAGQ+ + Y HG ++VY +T SF V+ +
Sbjct: 46 KIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE 105
Query: 406 LLDMVGKIHVPIVLVGNKTDLHLERKI 486
+D V +LVGNK+D+ +++K+
Sbjct: 106 -IDRYAVEGVNRLLVGNKSDM-VDKKV 130
Score = 31.9 bits (69), Expect = 0.082
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 KIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTF-TKYIRLNSRNMKL 268
K+ ++G VGKS L+++F + + +SY TI F + L + +KL
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKL 59
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +1
Query: 232 QVHSFEFEEYEVKLV--DTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDK 405
++ + E + +KL DTAGQ+ + Y G +L+Y +T KSF V+ +
Sbjct: 47 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSN 106
Query: 406 LLDMVGKIHVPIVLVGNKTDLHLERKISTEE 498
++ +V +L+GNK D +R++S E+
Sbjct: 107 -VEQHASENVYKILIGNKCDCEDQRQVSFEQ 136
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 44.8 bits (101), Expect = 1e-05
Identities = 29/78 (37%), Positives = 43/78 (55%)
Frame = +1
Query: 265 VKLVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVGKIHVPIV 444
++L DTAGQ+ + Y D ++VY IT+ SF + + + G V IV
Sbjct: 62 LQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGD-DVIIV 120
Query: 445 LVGNKTDLHLERKISTEE 498
LVGNKTDL +R+++ EE
Sbjct: 121 LVGNKTDLADKRQVTQEE 138
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 KIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTF-TKYIRLNSRNMKL 268
K+ +G +SVGK+SLI +F+ QF ++Y TI F +K + L R ++L
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRL 62
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +1
Query: 265 VKLVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVGKIH---V 435
++L DTAGQ+ + + + VLVY + +SKSF+ + D+ L +
Sbjct: 59 LQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETF 118
Query: 436 PIVLVGNKTDLHLERKI 486
P +L+GNK D+ ++++
Sbjct: 119 PFILLGNKVDVEEQKRM 135
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 KIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTF-TKYIRLNSRNMKL 268
K+ ++G VGK+S++ Q+V +F Y TI F TK + ++ + + L
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTL 59
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 38.7 bits (86), Expect = 7e-04
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 262 EVKLVDTAGQDEYS-IFPLQYSMDFHGYVLVYSITSSKSFQIVQIIY-DKLLDMVGKIHV 435
E+ L DTAGQ++Y + PL Y D H ++ +S+ + +S VQ + ++L ++
Sbjct: 55 ELALWDTAGQEDYDRLRPLSYP-DSHVVLICFSVDAPESLDNVQEKWISEVLHFCS--NL 111
Query: 436 PIVLVGNKTDLHLERKISTE 495
PI+LVG K DL + K E
Sbjct: 112 PILLVGCKVDLRNDPKTIEE 131
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/52 (28%), Positives = 33/52 (63%)
Frame = +2
Query: 116 QRKIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTFTKYIRLNSRNMKLS 271
+RK+ ++G + GK+ L+I F +G F + Y PT+ + + ++ R+++L+
Sbjct: 6 RRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELA 57
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +2
Query: 80 LDSYF*IKMPSKQRKIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTFTKYIRLNSRN 259
+ S F K RKI ++G + GK+SL+ F +G F Y+PTI + I ++ +
Sbjct: 1 MSSCFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNS 60
Query: 260 MKLS 271
++LS
Sbjct: 61 IELS 64
Score = 31.5 bits (68), Expect = 0.11
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +1
Query: 223 HIHQVHSFEFEEYEVKLVDTAGQDEY-SIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIY 399
+IH + + E+ L DTAGQ+EY + L YS D H ++ +++ S S + +I
Sbjct: 50 YIHDIF-VDGNSIELSLWDTAGQEEYDQLRSLSYS-DTHVIMICFAVDSRDSLE--NVIT 105
Query: 400 DKLLDMVGKI-HVPIVLVGNKTDL 468
L ++ V +VLV K DL
Sbjct: 106 KWLPEVSSNCPGVKLVLVALKCDL 129
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 262 EVKLVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVGKIHVPI 441
++++ DTAGQ+ Y Y + + ++VY IT + S + + + K L + I
Sbjct: 65 KLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVI 123
Query: 442 VLVGNKTDLHLERK 483
L GNK DL ER+
Sbjct: 124 ALAGNKLDLAQERR 137
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +2
Query: 119 RKIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTF 229
+K+ ++G +VGKSSL+++FV+ QF D + TI F
Sbjct: 15 QKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAF 51
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +1
Query: 262 EVKLVDTAGQDEYS-IFPLQYSMDFHGYVLVYSITSSKSFQIVQIIY-DKLLDMVGKIHV 435
E+ L DTAGQ++Y + PL Y D H ++ +++ S S VQ + ++L +
Sbjct: 55 ELALWDTAGQEDYDRLRPLSYP-DSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSL-- 111
Query: 436 PIVLVGNKTDLHLERKISTE 495
PI+LV K DL + KI E
Sbjct: 112 PILLVACKADLRNDPKIIEE 131
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/52 (28%), Positives = 33/52 (63%)
Frame = +2
Query: 116 QRKIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTFTKYIRLNSRNMKLS 271
+RK+ ++G + GK+ L+I F +G F + Y PT+ + + ++ R+++L+
Sbjct: 6 RRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELA 57
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 265 VKLVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVG--KIHVP 438
++L DTAGQ+ + + + V+VY++ +SKSF V+ + L + P
Sbjct: 59 LQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFP 118
Query: 439 IVLVGNKTD 465
++VGN+ D
Sbjct: 119 FIIVGNQID 127
Score = 29.1 bits (62), Expect = 0.58
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 KIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTF-TKYIRLNSRNMKL 268
K+ ++G VGK+ L+ QFV +F Y TI F TK + ++ + + L
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTL 59
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.1 bits (77), Expect = 0.009
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +2
Query: 116 QRKIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTFTKYIRLNSRNMKLS 271
+RK+ ++G + GK+SL+ F G F Y PT+ + R++ ++++L+
Sbjct: 8 RRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLA 59
Score = 34.7 bits (76), Expect = 0.012
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +1
Query: 262 EVKLVDTAGQDEYS-IFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVGKIHVP 438
++ L DTAGQ+EY + P+ Y+ H ++ ++I S S + V + + ++ + +VP
Sbjct: 57 QLALWDTAGQEEYERLRPMSYA-KAHIILVGFAIDSPDSLENVSTKWIEEINTLCP-NVP 114
Query: 439 IVLVGNKTDLHLERKISTEE 498
+LVG K DL + ++ EE
Sbjct: 115 FILVGMKADLRSD-PVAIEE 133
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 34.7 bits (76), Expect = 0.012
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +1
Query: 253 EEYEVKLVDTAGQDEYS-IFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKLLDMVGK- 426
E Y + L DTAGQ++Y + PL Y +++ +S+TS SF+ V+ +K V
Sbjct: 49 EPYTLGLFDTAGQEDYDRLRPLSYPQT-DVFLVCFSVTSPASFENVK---EKWFPEVHHH 104
Query: 427 -IHVPIVLVGNKTDL 468
VP ++VG + DL
Sbjct: 105 CPGVPCLIVGTQIDL 119
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 122 KIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTF 229
K ++G +VGK+ L+I + +F Y PT+ + +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNY 40
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 34.7 bits (76), Expect = 0.012
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 262 EVKLVDTAGQDEYS-IFPLQYSMDFHGYVLVYSITSSKSF-QIVQIIYDKLLDMVGKIHV 435
E+ L DTAGQ+EY + PL Y + + +L +SI S + + Y ++ +
Sbjct: 65 ELALWDTAGQEEYDRLRPLSYP-NSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPR--T 121
Query: 436 PIVLVGNKTDLHLER 480
PIVLVG K DL +R
Sbjct: 122 PIVLVGLKADLRKDR 136
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 119 RKIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTI-ENTFT 232
+K+ ++G GK+ L+I F G F + Y PT+ EN T
Sbjct: 15 KKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYIT 53
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 34.3 bits (75), Expect = 0.015
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +1
Query: 226 IHQVHSF-EFEEYEVKLVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYD 402
+H +H F E + DTAGQ++ Y + ++++ +TS +++ V +
Sbjct: 46 VHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWR 105
Query: 403 KLLDMVGKIHVPIVLVGNKTDLHLERKISTE 495
L+ + I PIVL GNK D+ ERK+ +
Sbjct: 106 DLVRVCENI--PIVLCGNKVDVK-ERKVKAK 133
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 32.7 bits (71), Expect = 0.047
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = +2
Query: 122 KIAMMGYRSVGKSSLIIQFVEGQFVDSYDPTIENTFTKYIRLNSRNMKLS 271
K+ M+G S+GK+SL++ +V+G F + T+ F + ++ RN +++
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEK-TISIRNTEIT 60
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 68 LTKSLDSYF*IKMPSKQRKIAMMGYRSVGKSSLI 169
L KSL SY K + ++GY +VGKSS+I
Sbjct: 253 LLKSLKSYSAKKKLKSSLTVGVIGYPNVGKSSVI 286
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 253 EEYEVKLVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIY 399
+EY L++ ++ LQ S+ HG + ITSS IVQ +Y
Sbjct: 1624 DEYLFSLMENEAFNKVEDAALQQSLK-HGIAYISEITSSNDQNIVQYLY 1671
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 271 LVDTAGQDEYSIFPLQYSMDFHGYVLVYSITSSKSFQIVQIIYDKL 408
L++ A D S F L ++D +V V S+T S + ++++YDK+
Sbjct: 72 LIELAHNDRTSSF-LCGALDDLNHVNVNSVTDIDSSERIRLVYDKI 116
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 351 LLYYIKQKFSNSPNHLRQITGHGWQ-NSCPNSFSWK*NRS 467
+L+Y K +F S +HLR + H + C +FS + N++
Sbjct: 18 ILFYAKNRFCISIDHLRPLKSHRTHGHYCLLNFSLRENKN 57
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/51 (25%), Positives = 31/51 (60%)
Frame = +2
Query: 50 YFVQFILTKSLDSYF*IKMPSKQRKIAMMGYRSVGKSSLIIQFVEGQFVDS 202
YF Q ++TK+ ++ +M K R++A+ + V + +L+ + + +F+D+
Sbjct: 219 YFYQLLMTKTPVVFYVKQMVGKTRQLAVEVHNHVEEKALVDELL--KFLDN 267
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 113 KQRKIAMMGYRSVGKSSL 166
K RKI +MG R GKSS+
Sbjct: 2 KPRKIILMGLRRSGKSSI 19
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 540 VSTKQLSIFQLSFTFLCAYLSF*MKICFISN*NYWDMNFANH 415
++++ +++FQLS +C YLS + N D +F H
Sbjct: 780 LASQTIALFQLSLNSMCRYLSRVTGTRLTNETNKLDQDFTVH 821
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,685
Number of Sequences: 5004
Number of extensions: 53955
Number of successful extensions: 175
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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