Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0937
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.4  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   4.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 345 YIAMKIHTILKWKYTVFILTGCV 277
           Y+AM +  I  W +TV  + G V
Sbjct: 541 YVAMVLDRIFLWIFTVACVLGTV 563


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 464 SVLFPTKTIGT*ILPTMSSNLS*MIW 387
           +VLFP K IG       S NLS + W
Sbjct: 14  AVLFPEKIIGLHNNMCTSLNLSNLFW 39


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 484 SFFLNEDLFYFQLKLLGHEF 425
           +FF+NE   YF +    +EF
Sbjct: 98  TFFVNEKQSYFHIATTSNEF 117


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 484 SFFLNEDLFYFQLKLLGHEF 425
           +FF+NE   YF +    +EF
Sbjct: 98  TFFVNEKQSYFHIATTSNEF 117


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 484 SFFLNEDLFYFQLKLLGHEF 425
           +FF+NE   YF +    +EF
Sbjct: 37  TFFVNEKQSYFHIATTSNEF 56


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 394 IYDKLLDMVGKIHVPIVLVGNKTDLHLERKIS 489
           +YD LL    K+  P+V V +   + ++ K+S
Sbjct: 28  LYDDLLSNYNKLVRPVVNVTDALTVKIKLKLS 59


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 342 IAMKIHTILKWKYTVFILT 286
           I +  H ILK   T+F+LT
Sbjct: 341 ITLTFHEILKRANTLFVLT 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,047
Number of Sequences: 438
Number of extensions: 3613
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)