Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0935
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 584 SNSDTGVPTMRLRPSTTTFLPAIVTRSS*SVPRT 483
           S++ + +PT R   S  T+    V  S  SVP T
Sbjct: 78  SSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTT 111


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 398 KDVDGLNTINEGRVAVGDLSGFIPCTPAGCVEL 496
           KD+     I    ++V DL   + CTP   VE+
Sbjct: 97  KDMRNSTNIFLVNLSVADLMVLLVCTPTVLVEV 129


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 398 KDVDGLNTINEGRVAVGDLSGFIPCTPAGCVEL 496
           KD+     I    ++V DL   + CTP   VE+
Sbjct: 97  KDMRNSTNIFLVNLSVADLMVLLVCTPTVLVEV 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,263
Number of Sequences: 336
Number of extensions: 2899
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)