Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0935
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 74 2e-14
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 66 3e-12
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 40 3e-04
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 1.8
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch... 27 2.3
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 4.1
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 26 4.1
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 5.4
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 5.4
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.4
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.4
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 9.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 9.4
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 73.7 bits (173), Expect = 2e-14
Identities = 32/71 (45%), Positives = 48/71 (67%)
Frame = +3
Query: 42 MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEK 221
MA ++ G +A + +LR+Q++ ++S F L I+QVGGREDSNVY+RMK +AA +
Sbjct: 1 MALLLEGTSLARKVREELREQISSIKSVDPYFNVSLKIIQVGGREDSNVYVRMKTRAANE 60
Query: 222 IGIAAEHIRLP 254
GI+ EH+ P
Sbjct: 61 AGISCEHVNFP 71
Score = 69.3 bits (162), Expect = 4e-13
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +2
Query: 257 DITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTINEGR 436
DITE +LL I NE P+VHGIIVQ+PL + I+ +T+AV+P+KDVDG N G+
Sbjct: 73 DITEYDLLLAIKGFNEDPTVHGIIVQLPLPAH--INEQIITEAVAPEKDVDGFCETNLGK 130
Query: 437 VAVGDLSG-FIPCTPAGCVELIK 502
+ + F CTP G + ++K
Sbjct: 131 LTKREGQPLFTACTPKGIMCILK 153
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/45 (53%), Positives = 37/45 (82%)
Frame = +1
Query: 511 VTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEI 645
+ + GK+ VV+GRS IVG P+S LL+ +ATVT+CHSKT+++++I
Sbjct: 157 INVQGKHAVVIGRSNIVGRPMSILLEKANATVTLCHSKTESIADI 201
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 66.5 bits (155), Expect = 3e-12
Identities = 33/72 (45%), Positives = 48/72 (66%)
Frame = +3
Query: 45 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 224
A I++G +A ++ + ++V L++K F+P LAIVQVG REDSNVY+RMK KAA +
Sbjct: 33 ANILNGKLLARKLQRSVAEEVQALKAKDRNFKPALAIVQVGKREDSNVYVRMKEKAARLV 92
Query: 225 GIAAEHIRLPGT 260
GI ++ P T
Sbjct: 93 GIDFKYCPFPET 104
Score = 65.3 bits (152), Expect = 7e-12
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 245 PLTRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTI 424
P I LL ++ LN+ +VHG++VQ+PL ++ VT++++P KDVDG
Sbjct: 100 PFPETIQMPALLHELKKLNDDHTVHGVLVQLPLPKH--LNERTVTESITPPKDVDGFGAF 157
Query: 425 NEGRVAVGDLSGF-IPCTPAGCVELIK 502
N G +A D + PCTP G +EL+K
Sbjct: 158 NIGLLAKNDATPIHYPCTPKGIMELLK 184
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/45 (62%), Positives = 39/45 (86%)
Frame = +1
Query: 502 EDRVTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNL 636
++++++AG N VVLGRS IVG P+S LL+ ++ATVTVCHSKTK+L
Sbjct: 185 DNKISVAGLNAVVLGRSDIVGNPISYLLRKDNATVTVCHSKTKDL 229
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Frame = +2
Query: 254 RDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGL------ 415
R++ + +L I N PSV+GI++ P+ +D D + + VSPDKDV+GL
Sbjct: 74 REVPKDDLEDAIVEANNDPSVNGIMIYFPVFNDGQ-DQY-LQQVVSPDKDVEGLCHKYVM 131
Query: 416 NTINEGRVAVGDLS--GFIPCTPAGCVELIK 502
N + R + + +PCTP V++++
Sbjct: 132 NMYHNIRHLDPEKTKKSILPCTPLAIVKILE 162
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 549 PPEHYHIFASYSDAVFLISSTH 484
P + YH+F +SD V+ IS +H
Sbjct: 202 PTKEYHVFHDHSDEVWQISYSH 223
>SPAC14C4.08 |mug5||meiotically upregulated gene
Mug5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 129 SGFEPRLAIVQVGGRE-DSNVYIRMKLKAAEKI 224
SGFE R+ I++ E DSN+YIR+K + K+
Sbjct: 11 SGFENRIKILEDLMNEFDSNLYIRLKRECDFKL 43
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -2
Query: 573 HRSTHDATPPEH--YHIFASYSDAVFLISSTHPAGVQGMNPDRSPTATRPSLIVFKPSTS 400
H S+ + P E + + S+ VFL T A V +NP + + S + KP++S
Sbjct: 129 HFSSIEKKPAEGNAFIVSTSFLSNVFLEQPTSNAVVSEVNPQQQKSQDSSSFVTEKPASS 188
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 93 LRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHI 245
L + +T+LR+ + P A V G ED N+Y+ + + +H+
Sbjct: 223 LTKLITKLRTNSISWNPMEAFNFVAGSEDHNLYMYDMRNLKRALHVYKDHV 273
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 266 EIELLAKITSLNESPSVHGIIVQMPLD-SDHAIDAHRVTDAVSPDKDVDGLNTI 424
+I +L I +L E +++ + D ++ A RVT+ V DK+ DG+ T+
Sbjct: 249 KIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVVTV 302
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 474 VQGMNPDRSPTATRPSLIVFKPSTSLSGETASV 376
V+ N + PT RP L V++ S LS T V
Sbjct: 447 VEDPNAEIGPTGERPKLFVWQNSWGLSTRTIGV 479
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 66 EVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRM--KLKAAEK 221
E+ S++ D+RQ++ +L + S E I + RE IRM +L++AE+
Sbjct: 31 EIESSLK-DVRQELQKLNEEQSRLEKNAQIPEYRVRESEAFLIRMQRRLESAEE 83
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 6 SARANETVLWAKMAQIISGIEVAGSIEND 92
S R E +W K I SG+ A +E+D
Sbjct: 335 SDRFKENSMWEKNRMITSGVSKAPGLESD 363
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 329 VQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTINEGRVAVG 448
++ P+D D+A H +T SP D D LN GR+ +G
Sbjct: 185 LEAPIDFDYASVHHNLTALSSP--DTDWLNAF-IGRIFLG 221
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 3 NSARANETVLWAKMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLA 152
N A N A+ AQ++ + + N L+ V S SGF P++A
Sbjct: 663 NQAWENIVAQAAQNAQVLGDPQTVKILANVLKTNVAACTSIGSGFYPQIA 712
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 1 GIRHEPTRQFSGLRWHKLYLGLK 69
G+ PTR+ + W KL GL+
Sbjct: 981 GLTRRPTRRLKQMHWEKLNSGLE 1003
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,414
Number of Sequences: 5004
Number of extensions: 48367
Number of successful extensions: 132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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