Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0935
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 81 1e-15
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 78 5e-15
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 67 1e-11
03_02_0500 - 8915300-8915349,8915567-8915717,8916308-8916516,891... 31 0.79
04_01_0039 + 455760-457631 30 1.8
05_03_0081 + 8249692-8249694,8249902-8250273,8250781-8251158 29 2.4
11_04_0125 + 13723966-13724011,13724282-13724430,13725100-137251... 28 7.4
08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084 28 7.4
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 28 7.4
11_06_0556 - 24950873-24951078,24951174-24951378,24951458-249515... 27 9.7
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 27 9.7
04_04_1388 - 33179270-33180679 27 9.7
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 LTRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 427
L D +E E+L I + N PSVHGI+VQ+PL H ++ + +AVS +KDVDG + +N
Sbjct: 147 LPEDSSEDEVLKHIATFNSDPSVHGILVQLPL--PHHMNDENILNAVSIEKDVDGFHPLN 204
Query: 428 EGRVAV-GDLSGFIPCTPAGCVELIKK 505
GR+A+ G F+PCTP GC+EL+ +
Sbjct: 205 IGRLAMQGRDPFFVPCTPKGCMELLHR 231
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/73 (36%), Positives = 42/73 (57%)
Frame = +3
Query: 45 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 224
A+II G VA I ++ ++ +++ G P LA++ VG R+DS Y+R K KA E +
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
Query: 225 GIAAEHIRLPGTS 263
GI + + LP S
Sbjct: 139 GIKSYEVNLPEDS 151
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +1
Query: 511 VTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEIT 648
V I GK VV+GRS IVG P + LL+ +ATV++ HS TK EIT
Sbjct: 234 VEIKGKRAVVIGRSNIVGMPAALLLQKANATVSIVHSNTKKPEEIT 279
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 78.2 bits (184), Expect = 5e-15
Identities = 37/88 (42%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LTRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 427
L DI+E L+A++ LN P+VHGI+VQ+PL I+ ++ + +S +KDVDG + +N
Sbjct: 69 LAEDISEAALVAEVHRLNADPAVHGILVQLPLPKH--INEEKILNEISLEKDVDGFHPLN 126
Query: 428 EGRVAV-GDLSGFIPCTPAGCVELIKKT 508
G++A+ G F+PCTP GC+EL+ ++
Sbjct: 127 IGKLAMKGRDPLFLPCTPKGCMELLTRS 154
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +3
Query: 42 MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEK 221
MAQII G VA I ++ V L S + P LA+V VG R+DS Y++MK KA +
Sbjct: 1 MAQIIDGKAVAADIRREVAADVAALSSAHN-LVPGLAVVIVGSRKDSQTYVQMKRKACAE 59
Query: 222 IGIAAEHIRL 251
+GI + + L
Sbjct: 60 VGIRSVDVDL 69
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/45 (57%), Positives = 30/45 (66%)
Frame = +1
Query: 511 VTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEI 645
VTI GK VV+GRS IVG PVS LL ATV++ HS+T N I
Sbjct: 156 VTINGKRAVVVGRSNIVGLPVSLLLLKADATVSIVHSRTPNPESI 200
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 248 LTRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 427
L + TE ++ ++ NE PSVHGI+VQ+PL +D R+ A+S +KDVDG + +N
Sbjct: 165 LPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQH--MDEERILSAISLEKDVDGFHPLN 222
Query: 428 EGRVAVGDLSG-FIPCTPAGCVELI 499
G +A+ F+PC C+EL+
Sbjct: 223 VGNLALRSRKPLFVPCAAKACLELL 247
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +3
Query: 45 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 224
A II G VA I + ++V ++++ G P LA+V VG R DS Y+R K+K E++
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNA-VGHVPGLAVVLVGDRRDSESYVRYKIKGCEEV 156
Query: 225 GIAAEHIRLPG 257
GI + LPG
Sbjct: 157 GIKSLLAELPG 167
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +1
Query: 511 VTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEIT 648
+ + GK+V V+GRS++VG P S LL+ HATV++ H+ T N EIT
Sbjct: 252 IELMGKHVTVIGRSKVVGLPTSLLLQRHHATVSIIHAFTTNPEEIT 297
>03_02_0500 -
8915300-8915349,8915567-8915717,8916308-8916516,
8916592-8916808,8917515-8917722,8917839-8917939
Length = 311
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 508 RVTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSE 642
R ++ GK +V G +R +G V E L ATV C K + LSE
Sbjct: 16 RWSLQGKTALVTGGTRGIGRAVVEELAALGATVHTCSRKEEELSE 60
>04_01_0039 + 455760-457631
Length = 623
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 287 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVS-PDKDVDGLNTINEGRVAVGDLSG 460
++ LNE P+++G +V + DSD ++ + DAV+ P +D + G LSG
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVTLPLHPLDDAAAEHGGYYVAALLSG 526
>05_03_0081 + 8249692-8249694,8249902-8250273,8250781-8251158
Length = 250
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 513 DAVFLISSTHPAGVQGMNPDRSPTATRPSLIVFKPSTSLSGETASV 376
+AVF+ + HP G QG N R T + V TSLS +S+
Sbjct: 197 EAVFMNNGYHPQGGQGWNQARRFTKEATTTTVVTSITSLSRRISSL 242
>11_04_0125 +
13723966-13724011,13724282-13724430,13725100-13725197,
13725321-13725528,13725678-13725695
Length = 172
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 490 GTD*EDRVTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLS 639
G ++R +AG +V GRS+ +G + E L +TV C LS
Sbjct: 74 GAGRDERWILAGATALVTGRSKGIGRAIVEELVGFGSTVHTCARSEAELS 123
>08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084
Length = 380
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 137 EARPF*TQPRHLLTQVIFYRS 75
EAR F QP+H LT ++ +RS
Sbjct: 338 EARSFEPQPKHRLTNLVIFRS 358
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 81 IENDLRQQVT--RLRSKWSGFEPRLAIVQVGG 170
I+NDL Q++T R+ S+W G + A VGG
Sbjct: 160 IDNDLAQRLTGTRMESRWRGRRSKGASTGVGG 191
>11_06_0556 -
24950873-24951078,24951174-24951378,24951458-24951588,
24951691-24951836,24952110-24952175,24953244-24953360,
24953974-24954063,24954568-24954707
Length = 366
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 534 HIFASYSDAVFLISSTHPAGVQGM 463
H F+S+ DA+ + S HP + G+
Sbjct: 152 HTFSSFEDAIHYVLSVHPRTLSGL 175
>09_02_0077 +
3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 6 SARANETVLWAKMAQIISGIEVAGSIENDLRQQVTRLRSKWSG 134
S R + W IIS + A SI R ++R+R + SG
Sbjct: 867 SVRTSSVSPWNMEQDIISAVRSAASIHRHGRHTLSRIRGRLSG 909
>04_04_1388 - 33179270-33180679
Length = 469
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 386 VSPDKDVDGLNTINEGRVAVGDLSGFIPCTPAGCV 490
V+PD D G E VA GDLS ++ P G V
Sbjct: 252 VAPDTDAAGERG-GEAAVAAGDLSAWLDAFPEGSV 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,313,059
Number of Sequences: 37544
Number of extensions: 346231
Number of successful extensions: 982
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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