Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0935
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00620.1 68417.m00086 tetrahydrofolate dehydrogenase/cyclohyd... 84 9e-17
At3g12290.1 68416.m01534 tetrahydrofolate dehydrogenase/cyclohyd... 81 5e-16
At4g00600.1 68417.m00084 tetrahydrofolate dehydrogenase/cyclohyd... 81 6e-16
At2g38660.1 68415.m04748 tetrahydrofolate dehydrogenase/cyclohyd... 70 2e-12
At5g46570.1 68418.m05734 protein kinase family protein contains ... 32 0.38
At4g04670.1 68417.m00683 Met-10+ like family protein / kelch rep... 29 2.7
At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containi... 29 2.7
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra... 28 4.7
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra... 28 4.7
At1g72300.1 68414.m08358 leucine-rich repeat transmembrane prote... 28 4.7
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 28 4.7
At1g60300.1 68414.m06790 apical meristem formation protein-relat... 28 6.1
At4g26540.1 68417.m03823 protein kinase family protein Three fal... 27 8.1
At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein ... 27 8.1
>At4g00620.1 68417.m00086 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
(C1-THF synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
contains Pfam profiles PF02882: Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
catalytic domain
Length = 360
Score = 83.8 bits (198), Expect = 9e-17
Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 LTRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 427
L D +E E+L ++ N+ PSVHGI+VQ+PL S +D + +AVS +KDVDG + +N
Sbjct: 136 LAEDSSEEEVLKSVSGFNDDPSVHGILVQLPLPSH--MDEQNILNAVSIEKDVDGFHPLN 193
Query: 428 EGRVAV-GDLSGFIPCTPAGCVELIKK 505
GR+A+ G F+PCTP GC+EL+ +
Sbjct: 194 IGRLAMRGREPLFVPCTPKGCIELLHR 220
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +1
Query: 511 VTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEIT 648
+ I GK VV+GRS IVG P + LL+ E ATV++ HS+TKN EIT
Sbjct: 223 IEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIIHSRTKNPEEIT 268
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +3
Query: 45 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 224
A +I G VA I +++ +V+R++ G P LA++ VG R+DS Y+R K KA + +
Sbjct: 69 AIVIDGKAVAKKIRDEITIEVSRMKES-IGVIPGLAVILVGDRKDSATYVRNKKKACDSV 127
Query: 225 GIAAEHIRL 251
GI + +RL
Sbjct: 128 GIKSFEVRL 136
>At3g12290.1 68416.m01534 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
(C1-THF synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
contains Pfam profiles PF02882: Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
catalytic domain
Length = 299
Score = 81.4 bits (192), Expect = 5e-16
Identities = 38/88 (43%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LTRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 427
L +++E +L++K+ LN +P VHGI+VQ+PL H + H + A+S DKDVDG + +N
Sbjct: 76 LPEEVSEADLISKVHELNSNPDVHGILVQLPLPK-HINEEH-ILGAISIDKDVDGFHPLN 133
Query: 428 EGRVAV-GDLSGFIPCTPAGCVELIKKT 508
G++A+ G F+PCTP GC+EL+ ++
Sbjct: 134 IGKLAMKGREPLFLPCTPKGCLELLARS 161
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/70 (38%), Positives = 42/70 (60%)
Frame = +3
Query: 45 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKI 224
A+II G +A +I +++ ++V L K G P LA+V VG R+DS Y+ K KA ++
Sbjct: 9 AKIIDGKAIAHTIRSEIAEEVRGLSEK-HGKVPGLAVVIVGSRKDSQTYVNTKRKACAEV 67
Query: 225 GIAAEHIRLP 254
GI + + LP
Sbjct: 68 GIKSFDVGLP 77
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = +1
Query: 511 VTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKN 633
V I G+ VV+GRS IVG PVS LL ATVT HS TK+
Sbjct: 163 VKIKGQRAVVVGRSNIVGLPVSLLLLKADATVTTVHSHTKD 203
>At4g00600.1 68417.m00084 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
precursor (C1-THF synthase) [Includes:
Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
Formyltetrahydrofolate synthetase (EC 6.3.4.3)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
NAD(P)-binding domain, PF00763: Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain
Length = 310
Score = 81.0 bits (191), Expect = 6e-16
Identities = 38/84 (45%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 DITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTINEGR 436
D +E E+L ++ N+ PSVHG++VQ+PL S +D + +AVS +KDVDG + +N GR
Sbjct: 89 DSSEEEVLKYVSGFNDDPSVHGVLVQLPLPSH--MDEQNILNAVSIEKDVDGFHPLNIGR 146
Query: 437 VAV-GDLSGFIPCTPAGCVELIKK 505
+A+ G F+PCTP GC+EL+ +
Sbjct: 147 LAMRGREPLFVPCTPKGCIELLHR 170
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +1
Query: 511 VTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEIT 648
+ GK VV+GRS IVG P + LL+ E ATV++ HS+T N E+T
Sbjct: 173 IEFKGKRAVVIGRSNIVGMPAALLLQKEDATVSIIHSRTMNPEELT 218
>At2g38660.1 68415.m04748 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
precursor (C1-THF synthase) [Includes:
Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
Formyltetrahydrofolate synthetase (EC 6.3.4.3)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
NAD(P)-binding domain, PF00763: Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain
Length = 352
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 LTRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 427
L D TE ++++ + NE S+HGI+VQ+PL ++ ++ + V +KDVDG + +N
Sbjct: 130 LPEDCTEGQIISVLRKFNEDTSIHGILVQLPLPQH--LNESKILNMVRLEKDVDGFHPLN 187
Query: 428 EGRVAV-GDLSGFIPCTPAGCVELIKKT 508
G +A+ G F+ CTP GCVEL+ +T
Sbjct: 188 VGNLAMRGREPLFVSCTPKGCVELLIRT 215
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +1
Query: 511 VTIAGKNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNLSEIT 648
V IAGKN VV+GRS IVG P+S LL+ ATV+ H+ TK+ IT
Sbjct: 217 VEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEHIT 262
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +3
Query: 51 IISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGI 230
+I G +A I + +V +++ K G P LA+V VG + DS Y+R K+KA E+ GI
Sbjct: 65 VIDGNVIAEEIRTKIISEVGKMK-KAVGKVPGLAVVLVGEQRDSQTYVRNKIKACEETGI 123
Query: 231 AAEHIRLP 254
+ LP
Sbjct: 124 KSVLAELP 131
>At5g46570.1 68418.m05734 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 489
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 54 ISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGI 230
++G +V I+N ++ LR +GF P IV GG + NV R KL+ + I
Sbjct: 26 VNGDQVDQEIQNFKEFELNELRKATNGFSPS-CIVSEGGEKAPNVVYRGKLEGNHLVAI 83
>At4g04670.1 68417.m00683 Met-10+ like family protein / kelch
repeat-containing protein contains Pfam profiles
PF01344: Kelch motif, PF02475: Met-10+ like-protein
Length = 995
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 526 KNVVVLGRSRIVGTPVSELLKWEHATVTVCHSKTKNL 636
K ++ L + IVG PV +L W H+ T+ S K +
Sbjct: 249 KELIPLEKLSIVGEPVEKLHLWGHSACTIDESDRKEV 285
>At2g35130.1 68415.m04309 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 591
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 443 VGDLSGFIPCTPAGCVELIKKTASL*LAKMW*CSGGVASWVLRCQS 580
V D+ G +P T A +LI + L L K W V W+LR S
Sbjct: 105 VADVLGALPSTHASWDDLINVSVQLRLNKKWDSIILVCEWILRKSS 150
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 459
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 338 PLDSDHAIDAHRVTDAVSPDKDVDGLNTINEGRVAVGDL--SGFIPCTPAG 484
P DSD + H + D + P +D ++GR A D+ G +P G
Sbjct: 97 PSDSDRKVVPHHLIDILHPSQDYSVGQFYDDGRQATKDILNRGRVPIVTGG 147
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 463
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 338 PLDSDHAIDAHRVTDAVSPDKDVDGLNTINEGRVAVGDL--SGFIPCTPAG 484
P DSD + H + D + P +D ++GR A D+ G +P G
Sbjct: 97 PSDSDRKVVPHHLIDILHPSQDYSVGQFYDDGRQATKDILNRGRVPIVTGG 147
>At1g72300.1 68414.m08358 leucine-rich repeat transmembrane protein
kinase, putative similar to GI:3641252 from [Malus x
domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
Length = 1095
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 398 KDVDGLNTINEGRVAVGDLSGFIPCTPAGCVELIK 502
KD+ L+ ++ ++ V +L G IP + A C +L+K
Sbjct: 313 KDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLVK 347
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 12 RANETVLWAKMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLA 152
R L ++ ++ +EVAG E+DL Q++ ++ + G E LA
Sbjct: 173 RVETEKLTSENKELNEKLEVAGETESDLNQKLEDVKKERDGLEAELA 219
>At1g60300.1 68414.m06790 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 322
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 480 AGVQGMNPDRSPTATRPSLIVFKPSTSLSGET 385
A V NPD+ + RP ++ KP T G+T
Sbjct: 46 ANVFTKNPDKVFNSERPRFVIVKPRTEACGKT 77
>At4g26540.1 68417.m03823 protein kinase family protein Three false
introns were added with non-consensus splice sites to
circumenvent frameshifts likely due to sequencing
errors; this is extremely unusual and is under
investigation.
Length = 1089
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 356 AIDAHRVTDAVSPDKDVDGLNTINEGRVAVGDLSGFIPCTPAGCVELIK 502
AID + + S K++ GL + + + DLSGFIP C L +
Sbjct: 410 AIDLSYNSLSGSIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTNLYR 458
>At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein
(RRS1) family protein contains Pfam profile PF04939:
Ribosome biogenesis regulatory protein (RRS1); similar
to Ribosome biogenesis regulatory protein homolog
(Swiss-Prot:Q15050) [Homo sapiens]
Length = 318
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 168 GREDSNVYIRMKLKAAEKIGIAAEHIRLPGTSL 266
G+++ N LKAAEK G H++L TSL
Sbjct: 163 GKQEKNRL--QNLKAAEKAGALPSHVQLAATSL 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,628,509
Number of Sequences: 28952
Number of extensions: 266138
Number of successful extensions: 738
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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