Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0931
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   2.7  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   4.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   6.3  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   8.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.4  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 162  QREKIQFRTSESERIDRASREPLDRGEREKTNSAR 58
            +RE  + R  + +R DR SR+  DR     + SAR
Sbjct: 1586 ERENSRRRARQDDRRDRDSRQQRDRPRDRTSRSAR 1620


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 147 QFRTSESERIDRASREPLDRGEREKTNSARSFXLYTAFPI 28
           ++  +ESE  +R  +  L++ + EKTN+ + F  +   PI
Sbjct: 171 KYGLTESEVEERKKKYGLNQMKEEKTNNIKKFLSFFVGPI 210


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 251 TSIVFNEVXDLMXSYIFITNNTYXELYYAVIS 346
           ++IV + V DL+ +YI     T  ++Y  +IS
Sbjct: 827 SAIVRDTVLDLLGTYIMAYRETIPQIYGCIIS 858


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 227 FFSYSPFCTSIVF 265
           FF ++PFCTS VF
Sbjct: 246 FFLHAPFCTSEVF 258


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   ILKSNLSCVIGNAVYKXNDLAEFVFSLSPRSSGSRDALSILSLSLVLN-CIFSLWP*RIC 178
           +LK+N+SCV+ N  Y      E V  +        +  S  +  L LN  +   W   +C
Sbjct: 693 LLKTNVSCVLANHGYNDIKFEEMVLCVIKGDQNLLEHNSNNNAKLALNESLLCSWENLLC 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,536
Number of Sequences: 5004
Number of extensions: 27954
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)