Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0931
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440...    30   0.90 
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789...    30   1.2  
08_02_0406 + 16813099-16813166,16813914-16814480,16814549-168145...    27   8.4  

>11_01_0559 -
           4406815-4406922,4408954-4409042,4409177-4409270,
           4409344-4409481,4409570-4409727,4409826-4409916,
           4410003-4411637
          Length = 770

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +2

Query: 35  NAVYKXNDLAEFVFSLSPRSSGSRDALSILSLSLVLN 145
           N V K +D  EFV S  P + GSR ALS L   + L+
Sbjct: 251 NTVRKLDDGKEFVVSGQPAAGGSRGALSDLKTGVQLS 287


>01_01_0998 -
           7894254-7894515,7895133-7895270,7896049-7896246,
           7896334-7896786,7896877-7897098,7898100-7898227,
           7899325-7899432
          Length = 502

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 127 TLARPKLYFF--SLAVTNLSRVKFYYQ 201
           T+ RP  +FF  ++A+ N+S V FYYQ
Sbjct: 301 TILRPMAWFFFSNVAIPNISTVMFYYQ 327


>08_02_0406 +
           16813099-16813166,16813914-16814480,16814549-16814595,
           16814787-16815484
          Length = 459

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   ILKSNLSCVIGNAVYKXNDLAEFVFS 79
           +L    SC +G ++ K +DL EFV +
Sbjct: 35  VLSEGWSCYLGKSLVKESDLTEFVLT 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,994,026
Number of Sequences: 37544
Number of extensions: 147516
Number of successful extensions: 258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)