Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0931
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)                      30   0.92 
SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.92 
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)                29   2.8  
SB_24864| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_22176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                 28   4.9  
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)          27   6.5  

>SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)
          Length = 276

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 441 LLPAXRSLQQSNIIXPKSILEHANKXHIRN 352
           LLP+  SL++ NI+ P+     ANK H+R+
Sbjct: 98  LLPSFTSLEKHNIVTPRQRGIQANKFHLRS 127


>SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 441 LLPAXRSLQQSNIIXPKSILEHANKXHIRN 352
           LLP+  SL++ NI+ P+     ANK H+R+
Sbjct: 307 LLPSFTSLEKHNIVTPRQRGIQANKFHLRS 336


>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
          Length = 617

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 115 VYSLTLARPKLYFFSLAVTNLSRVKFYYQR 204
           VY  TL  P ++  SL++    RVKF Y R
Sbjct: 240 VYHSTLTEPPMFLSSLSIKFTGRVKFVYCR 269


>SB_24864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 147 VFFLSGRNESVAS*ILLSTPKEVSLQNFFPIHHFAPL*FST 269
           VF  SGR E     ++ S PK +      P  HF P+ FST
Sbjct: 49  VFSPSGRYEQRRLKVMSSVPKTLDAHVQMPPPHFLPMPFST 89


>SB_22176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 147 VFFLSGRNESVAS*ILLSTPKEVSLQNFFPIHHFAPL*FST 269
           VF  SGR E     ++ S PK +      P  HF P+ FST
Sbjct: 49  VFSPSGRYEQRRLKVMSSVPKTLDAHVQMPPPHFLPMPFST 89


>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 519

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 183 SRQIRYGQREKIQFRTSESERIDRASREPLDRGEREK 73
           SR++    RE+ + R  E ER    SREP DR E +K
Sbjct: 248 SREMAERGRERERERERERERERERSREPRDRLEGDK 284


>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 162 QREKIQFRTSESERIDRASREPLDRGEREKTNSAR 58
           +RE+++   +E ER+ R  RE   R ERE +N+ R
Sbjct: 687 ERERLERERAERERLQRVERE---RIEREPSNTTR 718


>SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)
          Length = 374

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = -1

Query: 159 REKIQFRTSESERIDRAS---REPLDRGEREKT 70
           REK+  +T E E+ ++     RE ++RGE++KT
Sbjct: 251 REKLSEKTKELEKAEKTISMLREAVNRGEKDKT 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,748
Number of Sequences: 59808
Number of extensions: 188341
Number of successful extensions: 380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)