Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0931
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    31   0.43 
At5g54860.1 68418.m06834 integral membrane transporter family pr...    27   7.0  

>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -1

Query: 177 QIRYGQREKIQFRTSESERIDRASRE-PLD--RGEREKTNSARS 55
           ++R G R+K   R   S+  DR+ R+ P D  R EREK +S+RS
Sbjct: 92  KVREGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSRS 135


>At5g54860.1 68418.m06834 integral membrane transporter family
           protein contains 10 transmembrane domains; contains Pfam
           PF03092: BT1 family; contains TIGRFAMS TIGR00788:
           folate/biopterin transporter; similar to high affinity
           folic acid/methotrexate transporter 5 (GI:21898554)
           [Leishmania tarentolae]
          Length = 491

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 130 LARPKLYFF--SLAVTNLSRVKFYYQ 201
           + RP  +FF   + V NLS V FYYQ
Sbjct: 290 ILRPMAWFFIAHITVPNLSTVMFYYQ 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,501,134
Number of Sequences: 28952
Number of extensions: 132848
Number of successful extensions: 258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)