Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0930
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    30   1.2  
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471...    29   2.7  
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295...    29   2.7  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    27   8.3  

>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 237 FPREASGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYV 362
           F ++  GGA+ + ++ GTD TE F++ H +     +LE Y +
Sbjct: 544 FLKDHPGGADSIMINAGTDCTEEFDAIH-SDKARGLLEMYRI 584


>08_02_0958 -
           23044708-23046045,23046131-23046363,23047059-23047199,
           23047296-23048334
          Length = 916

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 237 FPREASGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYV 362
           F ++  GGA+ + ++ GTD TE F++ H +     +L+ Y +
Sbjct: 572 FLKDHPGGADSILINAGTDCTEEFDAIH-SDKAKALLDTYRI 612


>08_02_0956 +
           23026108-23027146,23027255-23027395,23029334-23029566,
           23029652-23030989
          Length = 916

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 237 FPREASGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYV 362
           F ++  GGA+ + ++ GTD TE F++ H +     +L+ Y +
Sbjct: 572 FLKDHPGGADSILINAGTDCTEEFDAIH-SDKAKALLDTYRI 612


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +1

Query: 79  AEKKTHVSFPQLKYPSLRDEGLRDPVQWLIGKSMDDGAEGLWRVHNGIYNFXDFLEKH-- 252
           ++K+  +S+  LK   L  +   D  Q+ +   + +  +GLW +   + +  +FLEKH  
Sbjct: 286 SKKQYILSYDNLKVLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEKLNSEPEFLEKHIP 345

Query: 253 ----PVGRSGWSSLRVPISQKPSKVITSIRL*IKFS 348
                VG+      ++    + S ++ S+ L + FS
Sbjct: 346 TRQVTVGQFKLPKFKISFGFEASDLLKSLGLHLPFS 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,009
Number of Sequences: 37544
Number of extensions: 251360
Number of successful extensions: 585
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)