Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0930
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12) 32 0.30
SB_40386| Best HMM Match : BAR (HMM E-Value=0) 32 0.40
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 30 1.2
SB_42860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 28 6.4
SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39) 28 6.4
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22) 27 8.5
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037) 27 8.5
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 27 8.5
SB_47062| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_46566| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_45426| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_43798| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_43614| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_31068| Best HMM Match : DUF240 (HMM E-Value=2.1) 27 8.5
SB_26582| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_21916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_18259| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_15817| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 27 8.5
SB_6637| Best HMM Match : Phage_integr_N (HMM E-Value=1.4) 27 8.5
SB_2753| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_1614| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_59032| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_56361| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_46231| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_45162| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_44595| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_37211| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_31191| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_18421| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_9226| Best HMM Match : APOBEC_C (HMM E-Value=4.5) 27 8.5
SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8) 27 8.5
>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
Length = 303
Score = 32.3 bits (70), Expect = 0.30
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 184 DGAEGLWRVH-NGIYNFXDFLEKHPVGR 264
D G+W + +G+Y+ DF+E+HP G+
Sbjct: 168 DARHGVWTTYEDGVYDLTDFIEQHPGGK 195
>SB_40386| Best HMM Match : BAR (HMM E-Value=0)
Length = 369
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 28 NMAPKNVEYIXIAHRRAAEKKTHVSFPQLKYPSLRDEGLRDPVQWLIGKSMDDGAEG 198
N+ PK EY+ A+ K H++ P KYP EGL V L G+ + +G
Sbjct: 51 NLTPKTKEYLQPNATYNAKVKMHMTQPDEKYP--YTEGLMGDVMMLAGQEIGQVGKG 105
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 333 VNKVLEKYYVRGAKTPRNSPFTFEDDGFYRTLKRXVVEELKKVP 464
++KV K KTPR SP DDG R R +++ + P
Sbjct: 1120 LSKVSRKVRKASLKTPRPSPGKLRDDGITRPASRVSAQQISRKP 1163
>SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 181 DDGAEGLWRVHNGIYNFXDFLEKHPVGRSG 270
DDG + R H G+Y+ D L ++P+GR+G
Sbjct: 482 DDGVDR--RSHMGVYDLFDGLPRNPMGRTG 509
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 295 ISVPLESSNHSAPPDAS 245
IS PL+ NH+APPDAS
Sbjct: 855 ISSPLQCQNHTAPPDAS 871
>SB_42860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 61 IAHRRAAEKKTHVSFPQLKYPSLRDEG 141
IA R AEK++H +F +K+PS+ + G
Sbjct: 122 IAKRTMAEKESHSTFRIIKFPSVPEAG 148
>SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 497
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 276 LSKGTDITEAFESHHLNSSVNKVLEKY 356
+S G D+T E H LN + + L+KY
Sbjct: 248 VSHGVDVTNLPEDHRLNVIIREYLDKY 274
>SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)
Length = 378
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 206 RHKPSAPS-SMDFPINHCTGSLNPSSLSEGYLS 111
++KPS S S D +N TGSL + +S+GY S
Sbjct: 203 KYKPSILSKSPDQTVNETTGSLKLTCISDGYPS 235
>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
Length = 726
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 45 SHGVDVTNLPEDHRLNVIIREYLDKY 70
>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1214
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 151 SHGVDVTNLPEDHRLNVIIREYLDKY 176
>SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)
Length = 722
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 201 SHGVDVTNLPEDHRLNVIIREYLDKY 226
>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 430
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 221 SHGVDVTNLPEDHRLNVIIREYLDKY 246
>SB_47062| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 249
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 139 SHGVDVTNLPEDHRLNVIIREYLDKY 164
>SB_46566| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 240
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 196 SHGVDVTNLPEDHRLNVIIREYLDKY 221
>SB_45426| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 173
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 79 SHGVDVTNLPEDHRLNVIIREYLDKY 104
>SB_43798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 240 SHGVDVTNLPEDHRLNVIIREYLDKY 265
>SB_43614| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 168
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 79 SHGVDVTNLPEDHRLNVIIREYLDKY 104
>SB_31068| Best HMM Match : DUF240 (HMM E-Value=2.1)
Length = 453
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 205 SHGVDVTNLPEDHRLNVIIREYLDKY 230
>SB_26582| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 189
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 79 SHGVDVTNLPEDHRLNVIIREYLDKY 104
>SB_21916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 45 SHGVDVTNLPEDHRLNVIIREYLDKY 70
>SB_18259| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 81
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 45 SHGVDVTNLPEDHRLNVIIREYLDKY 70
>SB_15817| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 248
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 45 SHGVDVTNLPEDHRLNVIIREYLDKY 70
>SB_6637| Best HMM Match : Phage_integr_N (HMM E-Value=1.4)
Length = 397
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 287 SHGVDVTNLPEDHRLNVIIREYLDKY 312
>SB_2753| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 134
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 45 SHGVDVTNLPEDHRLNVIIREYLDKY 70
>SB_1614| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 123
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 79 SHGVDVTNLPEDHRLNVIIREYLDKY 104
>SB_59032| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 123
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 79 SHGVDVTNLPEDHRLNVIIREYLDKY 104
>SB_56361| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 274
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 218 SHGVDVTNLPEDHRLNVIIREYLDKY 243
>SB_46231| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 89
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 45 SHGVDVTNLPEDHRLNVIIREYLDKY 70
>SB_45162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 12 SHGVDVTNLPEDHRLNVIIREYLDKY 37
>SB_44595| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 134
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 45 SHGVDVTNLPEDHRLNVIIREYLDKY 70
>SB_37211| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 301
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 205 SHGVDVTNLPEDHRLNVIIREYLDKY 230
>SB_31191| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 133
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 89 SHGVDVTNLPEDHRLNVIIREYLDKY 114
>SB_18421| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 89
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 45 SHGVDVTNLPEDHRLNVIIREYLDKY 70
>SB_9226| Best HMM Match : APOBEC_C (HMM E-Value=4.5)
Length = 262
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 218 SHGVDVTNLPEDHRLNVIIREYLDKY 243
>SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)
Length = 320
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 279 SKGTDITEAFESHHLNSSVNKVLEKY 356
S G D+T E H LN + + L+KY
Sbjct: 231 SHGVDVTNLPEDHRLNVIIREYLDKY 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,881
Number of Sequences: 59808
Number of extensions: 296863
Number of successful extensions: 671
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -