Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0930
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm recept...    29   2.4  
U13645-10|AAM15546.1|  418|Caenorhabditis elegans Hypothetical p...    27   9.8  
U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    27   9.8  

>U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical
           protein W03B1.6 protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 342 VLEKYYVRGAKTPRNSPFTFEDDGFYRTLKRXVVEELKKV 461
           VL +Y+  G+  P+N   +F+DD FY+ +K   ++ L  +
Sbjct: 188 VLARYFSVGSPAPKNVT-SFDDDPFYQVMKEQTLKLLSSI 226


>U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm receptor
           protein 90 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 413 SIIFKSKR*IPRCFSSPDVIFLENFIHRRIEVMTFEGFCDIGTLRELQPLR 261
           S+ +K+     +  S PD++F  N +      M    FC I T R+L+ LR
Sbjct: 181 SLYYKTDDSGAKAISWPDILFAVNVVKLISICMIIVLFCGISTFRKLRTLR 231


>U13645-10|AAM15546.1|  418|Caenorhabditis elegans Hypothetical
           protein C05D10.4c protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 34  APKNVEYIXIAHRRAAEKKTHVSFPQLKYPSLRDEGLRDPVQWLIGKSMDDGA 192
           A  N+E   ++ +R    K  +S    K  ++++  L D + WL    MDD A
Sbjct: 189 AMSNMEQHRVSKKRTRRAKEKMSQAAWKRKTVKEWSLDDVLLWLQSAQMDDVA 241


>U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical
           protein C05D10.4b protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 34  APKNVEYIXIAHRRAAEKKTHVSFPQLKYPSLRDEGLRDPVQWLIGKSMDDGA 192
           A  N+E   ++ +R    K  +S    K  ++++  L D + WL    MDD A
Sbjct: 368 AMSNMEQHRVSKKRTRRAKEKMSQAAWKRKTVKEWSLDDVLLWLQSAQMDDVA 420


>U13645-8|AAM15544.1|  565|Caenorhabditis elegans Hypothetical
           protein C05D10.4a protein.
          Length = 565

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 34  APKNVEYIXIAHRRAAEKKTHVSFPQLKYPSLRDEGLRDPVQWLIGKSMDDGA 192
           A  N+E   ++ +R    K  +S    K  ++++  L D + WL    MDD A
Sbjct: 336 AMSNMEQHRVSKKRTRRAKEKMSQAAWKRKTVKEWSLDDVLLWLQSAQMDDVA 388


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 267 WLELSKGTDITEAFESHHLNSSVNKVLEKYYVRGAKTPRNSPFTFEDDGFYRTLKRXVVE 446
           W +L+K T    A  S+ L  +++KV    +  G  TP  S    E+     + ++ VVE
Sbjct: 723 WEKLAKSTS---AAASNSLFEALSKVQADNFSGGGSTPSYSKSYLEEMNRVMSTRKRVVE 779

Query: 447 ELKKV 461
           E  +V
Sbjct: 780 EAAEV 784


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,291,299
Number of Sequences: 27780
Number of extensions: 214325
Number of successful extensions: 508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)