Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0929
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 31 0.13
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 28 1.2
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 28 1.2
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 1.6
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 27 1.6
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 1.6
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 26 3.7
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 26 4.9
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 26 4.9
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 6.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.5
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 31.1 bits (67), Expect = 0.13
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 244 DLGVPLSVINIYNPDDVEVIVSTTKHNEKSSVYKFLKP 357
++ +S NI+ PDD++ ++ + K K +YK ++P
Sbjct: 182 EMNSQVSKANIHAPDDMQFMIKSRKSRSKGFIYKKIEP 219
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +1
Query: 259 LSVINIYNPDDV---EVIVSTTKHNEKSSVYKFLKPWLGDGL 375
L++ N YN D + S + HN S+Y L W+GD L
Sbjct: 737 LNLANCYNYDMAVFPDSAHSISYHNASLSIYHRLSEWIGDAL 778
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -2
Query: 332 LFSLCFVVETITSTSSG-LYIFITDKGTPKSYIFH---PSDLRISCPVSLIQLMTTSLSL 165
+ +LCF + SS ++ F DKG P S+IF P + ++ + L+ L T + L
Sbjct: 343 IIALCFNCSALCLASSREIFAFARDKGLPGSWIFRKLTPGGIPLNA-ILLVNLYTIIVGL 401
Query: 164 V 162
+
Sbjct: 402 L 402
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +1
Query: 244 DLGVPLS--VINIYNPDDVEVIVSTTKHN-EKSSVYKFLKPWLGDGLLISKGE 393
DL PL+ VI+ Y E+ +S N E S K KP++ G I+KGE
Sbjct: 1078 DLVSPLTWTVIDSYEFQQFEIPLSVALVNLEVSETTKLRKPYIAVGTSITKGE 1130
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -2
Query: 413 FLLCCHFSPLLISNPSPSHGFKNLYTELFSLCFVVETITSTSSGLYI 273
FL C P+L P S + + L LCF ++ ++SG ++
Sbjct: 82 FLWSCFLKPILSIQPKLSFFIDSSLSRLLLLCFGCLKLSKSTSGSFV 128
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -1
Query: 567 TMEFSVYSDTTGTMSIGFPIISPRFHQTXRIFFNYDTELSQDIEVESG 424
T +FS+Y D+ G M+ P++ ++ R+ LS + SG
Sbjct: 1287 TTKFSIYEDSNGEMAYYRPLLHVLYNTLNRLLSEEKENLSLSVGFVSG 1334
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 175 HYLWCIPENERQLWTRNFIHHHSFRII 95
H L + NE+ +W FIH+ F ++
Sbjct: 128 HKLALLLRNEQVIWVEKFIHNGGFGVV 154
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 332 LFSLCFVVETITSTSSGLYIFITDKGTPKSYIFHPSDLRIS-CPVSLIQLMTTSLS 168
LF +CF + + +S +++F T+ PKS D IS CP+ +LS
Sbjct: 7 LFIVCFSLVSAFKDTSPIFLFSTNSKLPKS----SDDSSISTCPMMFFDAAIEALS 58
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 434 WKAGVRIFLLCCHFSP 387
W GV +F +CC +SP
Sbjct: 488 WSLGVLVFEMCCGWSP 503
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 226 LGWNI*DLGVPLSVINIYNPDDVEVIVSTTK 318
LGW+ G+P +I+ +P + V+VST +
Sbjct: 1148 LGWDPKRYGIPDDIISQVDPTTLYVLVSTVE 1178
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 140 LSFILGNAPEIMMLSSVELMKLGRKFASRWD 232
+SF L N PEI + E++K+ F + D
Sbjct: 1759 ISFFLKNVPEITVQHQTEMLKMCSLFGNSED 1789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,867
Number of Sequences: 5004
Number of extensions: 57640
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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