Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0929
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57332| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_1738| Best HMM Match : p450 (HMM E-Value=0) 32 0.31
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 32 0.31
SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_1725| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_35141| Best HMM Match : p450 (HMM E-Value=0) 30 1.3
SB_21442| Best HMM Match : p450 (HMM E-Value=0) 30 1.3
SB_2334| Best HMM Match : p450 (HMM E-Value=0) 30 1.3
SB_57069| Best HMM Match : GETHR (HMM E-Value=1.7e-10) 30 1.7
SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_1809| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_51175| Best HMM Match : p450 (HMM E-Value=0) 29 3.8
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12) 28 6.7
>SB_57332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +1
Query: 250 GVPLSVINIYNPDDVEVIVSTTKHN-EKSSVYKFLKPWLGDGLLISKGEKWQQRRKILTP 426
G+ + + I +P V+ ++ T H +K + + P L GL S G ++R+++TP
Sbjct: 68 GIGANRVYITDPKLVKQVLLTNFHKYQKPDFVREVVPNLTSGLFTSAGSAHARQRRMVTP 127
Query: 427 AFHFNILRQFSVIIEENSXRLVESWR---NDRKTY 522
AF L ++++ + +LVE W N+ TY
Sbjct: 128 AFSPGRLELLMPVMKKETLKLVEIWNLKLNNEITY 162
>SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +1
Query: 250 GVPLSVINIYNPDDVEVIVSTTKHN-EKSSVYKFLKPWLGDGLLISKGEKWQQRRKILTP 426
G+ + + I +P V+ ++ T H +K + + P L GL S G ++R+++TP
Sbjct: 237 GIGANRVYITDPKLVKQVLLTNFHKYQKPDFVREVVPNLTSGLFTSAGSAHARQRRMVTP 296
Query: 427 AFHFNILRQFSVIIEENSXRLVESWR---NDRKTY 522
AF L ++++ + +LVE W N+ TY
Sbjct: 297 AFSPGRLELLMPVMKKETLKLVEIWNLKLNNEITY 331
>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
Length = 484
Score = 32.3 bits (70), Expect = 0.31
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +1
Query: 262 SVINIYNPDDVEVIVSTTKHNEKSSVYKFLKPW--LGDGLLISKGEKWQQRRKILTPAFH 435
+ I + +P+ V+ IV H + F+KP + G+ + +G W++ R LTP F
Sbjct: 74 AAIVVSDPEIVKQIVIKEFHKFPNRPL-FIKPNPPMDSGMFLGQGALWKRIRTTLTPTFS 132
Query: 436 FNILRQFSVIIEENSXRLVESWRNDRKTYRHSTC 537
L+Q II++ + L + T + C
Sbjct: 133 TAKLKQIVPIIDKATATLQSKMASFAATGESTDC 166
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +1
Query: 262 SVINIYNPDDVEVIVSTTKHNEKSSVYKFLKPW-----LGDGLLISKGEKWQQRRKILT 423
SV++I +PDDV++++ + K S+ + + + GL + GE+W + R +L+
Sbjct: 781 SVVSISDPDDVQMVLRSESKFPKRSLLPLIDQYRQLRQVPPGLAFAVGEEWYKHRTVLS 839
>SB_6244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 343 KFLKPWLGDGLLIS-KGEKWQQRRKILTPAFHFNILRQFSVIIEENSXRLVESWR 504
+F + LG L+ G+ W++ R++++P F + S I + + +L++ WR
Sbjct: 97 RFFQNVLGQFSLVGLSGDLWKKHRRLISPFFGRTYMTFASDIANQQTRKLIDRWR 151
>SB_1725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 31.5 bits (68), Expect = 0.54
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Frame = +1
Query: 265 VINIYNPDDVEVIVSTTKHNEKSSVYKFLK-----PWLGDGLLISKGEK-WQQRRKILTP 426
V+ + +P+ V+ ++ T + + VY+ L+ G G+L W ++R +L P
Sbjct: 89 VVFVVSPEMVKKVLVTYDLPKSTRVYEKLQFVYNQRCTGRGILTEPDPSAWHKKRTLLNP 148
Query: 427 AFH----FNILRQFSVIIEENSXRLVESWRNDRKT 519
AFH N++ F+VI E +L S +D KT
Sbjct: 149 AFHRKNLMNLMSPFNVICERMIDKL--SLISDGKT 181
>SB_35141| Best HMM Match : p450 (HMM E-Value=0)
Length = 565
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 370 GLLISKGEKWQQRRKILTPAFHFNILRQFSVIIEENSXRLVE 495
G+ + +KW++ R LTP F LRQ + I E+ L++
Sbjct: 126 GMFSATDDKWKRIRSTLTPTFTSGKLRQMNPKIRESCDTLMD 167
>SB_21442| Best HMM Match : p450 (HMM E-Value=0)
Length = 565
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 349 LKPWLGDGLLISKGEKWQQRRKILTPAFHFNILRQFSVIIEENSXRL 489
L P L + ++K KW++ RK++ PAF + L+ +IE + R+
Sbjct: 119 LPPPLDSEMFLAKYPKWKRVRKVIAPAFSGSKLKGTVGLIEGAAERM 165
>SB_2334| Best HMM Match : p450 (HMM E-Value=0)
Length = 498
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 337 VYKFLKPWLGDGLLISKGEKWQQRRKILTPAFHFNILRQFSVIIEENSXRLVE 495
V+K ++ + G+ + + W++ R LTP F LRQ + + E+ L++
Sbjct: 115 VFKDIRSEMRHGMFSATDDNWKRIRSTLTPTFTSGKLRQMTPKMRESCDTLMD 167
>SB_57069| Best HMM Match : GETHR (HMM E-Value=1.7e-10)
Length = 547
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +1
Query: 370 GLLISKGEKWQQRRKILTPAFHFNILRQFSVIIEENSXRLVESWRN--DRKTYRHSTCSI 543
GL SK E W++ R LTP F ++ ++ ++ L++ D ++ ST +
Sbjct: 126 GLFASKDEDWKRVRSTLTPTFTSGKMKTMIPLVSKSCDTLIQKLGEVADTESLSESTHAR 185
Query: 544 RVYTE-FHCETSMGHST 591
E H S+ ST
Sbjct: 186 ESLKESTHARESLSEST 202
>SB_14189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 373 LLISKGEKWQQRRKILTPAFHFNILRQFSVIIEENSXRLVESWRNDRKTYRHSTCSIRVY 552
L+ + + W++ R I+TP F ++Q +I E+ LVE K + S R Y
Sbjct: 32 LIALQDDDWRRLRHIVTPTFSAVKIKQVVPLISESCRILVEQLGQACKDGK-SVDVCRTY 90
Query: 553 TEFHCET 573
+F ET
Sbjct: 91 VKFTMET 97
>SB_1809| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 370 GLLISKGEKWQQRRKILTPAFHFNILRQFSVIIEENSXRLVE 495
G+ + +KW++ R LTP F LRQ + + E+ L++
Sbjct: 25 GMFSATDDKWKRIRSTLTPTFTSGKLRQMTPKMRESCDTLMD 66
>SB_51175| Best HMM Match : p450 (HMM E-Value=0)
Length = 408
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +1
Query: 373 LLISKGEKWQQRRKILTPAFHFNILRQFSVIIEENSXRLVESWRNDRKTYRHSTCSIRVY 552
L+ + + W++ R +TP F L+Q +I E+ LVE K + S R Y
Sbjct: 32 LISLQDDDWRRLRHFVTPTFSAVKLKQVVPLISESCRILVEQLGQACKDGK-SVDVCRTY 90
Query: 553 TEFHCET 573
+F ET
Sbjct: 91 VKFTMET 97
>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
Length = 316
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +2
Query: 56 IASFFLLIHLAFNYNS-KAVMMNKV---PGPKLSFILGNAPEIMMLSSVELMKLGRKFAS 223
+ SF LL+H F Y + A M V PG S +G+AP + + L+++ +
Sbjct: 7 LRSFVLLVHFVFRYYAISAESMKAVLFTPGGPESMYIGDAPRPKLKETEVLIRVHFTALN 66
Query: 224 RWDGIYR 244
R D + R
Sbjct: 67 RADTLQR 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,886,966
Number of Sequences: 59808
Number of extensions: 395680
Number of successful extensions: 928
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -