Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0928
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    40   4e-04
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   3.9  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    25   6.8  

>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +3

Query: 504 EGAAAVGQSELMSMYDAMFSQYNVKIAQVLVTKPD 608
           +  AAVGQ  L+S++D +F+Q    IAQVL+T+ D
Sbjct: 81  QAIAAVGQGRLISLWDTLFTQLRQPIAQVLITRND 115



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +1

Query: 250 IGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKL 414
           I +KLG++ I  E  +   +  L+ I+E V +    G   ++V+SG +A G ++L
Sbjct: 14  IVIKLGTSSICDEKTHEPLISNLSLIVETVVKLRKLGHNVVLVSSGGIAMGLRRL 68


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 464 LGDKVSRMDKDMSSSCVSFCR 402
           LGD +SR+D+D+  + V  C+
Sbjct: 110 LGDNLSRIDRDLIKNFVELCK 130


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 205 AENLH*QIAAKVRQKIGVKLGSAVITR 285
           A N H ++A KV ++IG+ LG   + +
Sbjct: 10  AGNSHPELAEKVARRIGLSLGKVAVVQ 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,459
Number of Sequences: 5004
Number of extensions: 43862
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)